miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 59668 0.66 0.830197
Target:  5'- cUCGgcGGUCCcGGCGCgcgagcggaUCGCGgcUCCCCu -3'
miRNA:   3'- aAGU--UCAGGuUCGCGa--------GGCGC--AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 7641 0.66 0.838524
Target:  5'- -aCGGG-CCAGGCGCggggCCGCGcggcggcgcuUCCgCCc -3'
miRNA:   3'- aaGUUCaGGUUCGCGa---GGCGC----------AGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 84754 0.66 0.838524
Target:  5'- -gCGAGcgCUAGuGCGCgccugCUGCGUCCCg -3'
miRNA:   3'- aaGUUCa-GGUU-CGCGa----GGCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 2779 0.66 0.838524
Target:  5'- --gAGGUCCcgcAGCGC-CCGCG-CCgCCu -3'
miRNA:   3'- aagUUCAGGu--UCGCGaGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 103809 0.66 0.84666
Target:  5'- -gCAGGggCAGGCGCgggCCGCGcgccaCCCg -3'
miRNA:   3'- aaGUUCagGUUCGCGa--GGCGCag---GGG- -5'
23563 5' -57.1 NC_005261.1 + 124554 0.66 0.84666
Target:  5'- -cCAcGcCCGcGCGCcCCGCGcCCCCc -3'
miRNA:   3'- aaGUuCaGGUuCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 123287 0.66 0.854601
Target:  5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3'
miRNA:   3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5'
23563 5' -57.1 NC_005261.1 + 37767 0.66 0.854601
Target:  5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3'
miRNA:   3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 85388 0.66 0.854601
Target:  5'- cUCGGGcuUCUgguAGGCGC-CCGCGagCCCg -3'
miRNA:   3'- aAGUUC--AGG---UUCGCGaGGCGCagGGG- -5'
23563 5' -57.1 NC_005261.1 + 124910 0.66 0.853816
Target:  5'- -gCGAGUgCGAGgGCgCUGCGUacgaggcCCCCg -3'
miRNA:   3'- aaGUUCAgGUUCgCGaGGCGCA-------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 118119 0.67 0.776704
Target:  5'- -gCGGGcCCGcGCGCcuugCCGCGgaagCCCCc -3'
miRNA:   3'- aaGUUCaGGUuCGCGa---GGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 1586 0.67 0.776704
Target:  5'- aUCGAGcUCCAGGCGgaCCagGCcUUCCCg -3'
miRNA:   3'- aAGUUC-AGGUUCGCgaGG--CGcAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 61744 0.67 0.795152
Target:  5'- -gCGAGcgCCGAGgGCUCgGgGUCCgCg -3'
miRNA:   3'- aaGUUCa-GGUUCgCGAGgCgCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 70839 0.67 0.804158
Target:  5'- ---uGGUCCuGGCGCgcgCgGCGUCUUCg -3'
miRNA:   3'- aaguUCAGGuUCGCGa--GgCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 62905 0.67 0.767279
Target:  5'- --aAGGUCaCAGG-GCUCCGCGcgCCgCCg -3'
miRNA:   3'- aagUUCAG-GUUCgCGAGGCGCa-GG-GG- -5'
23563 5' -57.1 NC_005261.1 + 69938 0.67 0.757733
Target:  5'- --gAGGUCC--GCGC-CCGCGgccggggCCCCg -3'
miRNA:   3'- aagUUCAGGuuCGCGaGGCGCa------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 91874 0.67 0.795152
Target:  5'- cUCGGcGUCCGucGCGCUCUGUugucuGcCCCCg -3'
miRNA:   3'- aAGUU-CAGGUu-CGCGAGGCG-----CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 123489 0.67 0.800574
Target:  5'- -cCAGGgacaCCGGGCGCaccagcggcagugCCGCGUCCgCu -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa------------GGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 99490 0.67 0.804158
Target:  5'- ---cGG-CC-AGCGCcgCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGuUCGCGa-GGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 15364 0.67 0.804158
Target:  5'- ----cGUCCcggcGGCGCUCgGCGcCCUCg -3'
miRNA:   3'- aaguuCAGGu---UCGCGAGgCGCaGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.