miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 86899 0.72 0.505739
Target:  5'- ---uGGUCCGcgcgcGGCGCggacCCGCGUCCaCCg -3'
miRNA:   3'- aaguUCAGGU-----UCGCGa---GGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 66259 0.72 0.505739
Target:  5'- -gCAccugCCGcGCGCUCCGCG-CCCCg -3'
miRNA:   3'- aaGUuca-GGUuCGCGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 68865 0.72 0.515517
Target:  5'- cUCgAGGUCCAGcGCGCgcgcggCCGCGUCgUCg -3'
miRNA:   3'- aAG-UUCAGGUU-CGCGa-----GGCGCAGgGG- -5'
23563 5' -57.1 NC_005261.1 + 87723 0.72 0.515517
Target:  5'- aUCgAGGUCCAGGUGggCCGCGUCgCa -3'
miRNA:   3'- aAG-UUCAGGUUCGCgaGGCGCAGgGg -5'
23563 5' -57.1 NC_005261.1 + 18061 0.71 0.533306
Target:  5'- gUCGAgucGUCCAGGCccaGCUCUGCGgcgcucacguugCCCCa -3'
miRNA:   3'- aAGUU---CAGGUUCG---CGAGGCGCa-----------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 80156 0.71 0.535296
Target:  5'- -gCGGGcCCuGGCGCcgccgUCCGCGUCaCCCu -3'
miRNA:   3'- aaGUUCaGGuUCGCG-----AGGCGCAG-GGG- -5'
23563 5' -57.1 NC_005261.1 + 82677 0.71 0.544284
Target:  5'- cUCGAG-CCGcucgucgGGCGCcaccgCCGCGcUCCCCa -3'
miRNA:   3'- aAGUUCaGGU-------UCGCGa----GGCGC-AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 103246 0.71 0.545285
Target:  5'- ----cGUCCGcGCGC-CCGCGUCCgCg -3'
miRNA:   3'- aaguuCAGGUuCGCGaGGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 27892 0.71 0.545285
Target:  5'- aUCAGGUgCGcGCGCagCGCGUCCgCg -3'
miRNA:   3'- aAGUUCAgGUuCGCGagGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 10458 0.71 0.545285
Target:  5'- cUCGAGcagCCGGGCGuCUUCGCGcCCgCCg -3'
miRNA:   3'- aAGUUCa--GGUUCGC-GAGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 46143 0.71 0.555334
Target:  5'- -cCGAGaacgCCGAGCGCggcaCUGCG-CCCCa -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa---GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 84533 0.71 0.555334
Target:  5'- -cCAGGUCCAuGUGCUCCacacGCGggCCCa -3'
miRNA:   3'- aaGUUCAGGUuCGCGAGG----CGCagGGG- -5'
23563 5' -57.1 NC_005261.1 + 22789 0.71 0.565437
Target:  5'- --gGAGUCCGgccgcgAGCGCgagcucgggCCGCGgCCCCg -3'
miRNA:   3'- aagUUCAGGU------UCGCGa--------GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 63551 0.71 0.574569
Target:  5'- -cCAGcUCCc-GCGCggucgcgUCCGCGUCCCCg -3'
miRNA:   3'- aaGUUcAGGuuCGCG-------AGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 64835 0.71 0.575586
Target:  5'- -cCGGGUCCGcGCGCUgcagcgccaugaCCGCGUCgcguCCCa -3'
miRNA:   3'- aaGUUCAGGUuCGCGA------------GGCGCAG----GGG- -5'
23563 5' -57.1 NC_005261.1 + 94788 0.7 0.585776
Target:  5'- -gCGAcGUCCAGGCGCcgagCCa-GUCCCCg -3'
miRNA:   3'- aaGUU-CAGGUUCGCGa---GGcgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 77455 0.7 0.585776
Target:  5'- -cCAGGcCCGGGgCGCggcugcagCCGCGcCCCCg -3'
miRNA:   3'- aaGUUCaGGUUC-GCGa-------GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 55613 0.7 0.585776
Target:  5'- cUCcuGGUCCAgcAGCGCguccUCCGCGUCgUCa -3'
miRNA:   3'- aAGu-UCAGGU--UCGCG----AGGCGCAGgGG- -5'
23563 5' -57.1 NC_005261.1 + 104453 0.7 0.596
Target:  5'- -gCGGGgCCcAGCGCUcgCCGCGggCCCCg -3'
miRNA:   3'- aaGUUCaGGuUCGCGA--GGCGCa-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 63163 0.7 0.606251
Target:  5'- cUCcguGUCCGAcGUGCUCCGCGacacgCCCg -3'
miRNA:   3'- aAGuu-CAGGUU-CGCGAGGCGCa----GGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.