miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 48023 0.66 0.830197
Target:  5'- -gCGAG----GGCGCUCCGCcGcCCCCg -3'
miRNA:   3'- aaGUUCagguUCGCGAGGCG-CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 16645 0.66 0.830197
Target:  5'- -aCGAGgCCGAGgGCgagagcgaggCCuCGUCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCgCGa---------GGcGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 40838 0.66 0.827663
Target:  5'- ----uGUCCAcguaagccucgaagGGCGCgUCCGCGaaggccgCCCCg -3'
miRNA:   3'- aaguuCAGGU--------------UCGCG-AGGCGCa------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 32378 0.66 0.821689
Target:  5'- ---uGGUgCAGGCGCggcgcggCgGCGUCCCg -3'
miRNA:   3'- aaguUCAgGUUCGCGa------GgCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 72703 0.66 0.821689
Target:  5'- -cCAGGUCCGccAGCGUcgcgcCCGCcG-CCCCg -3'
miRNA:   3'- aaGUUCAGGU--UCGCGa----GGCG-CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 105292 0.66 0.821689
Target:  5'- -gCGAGcCCGGGCGCgcgagcgCgGgGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGa------GgCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 98282 0.66 0.821689
Target:  5'- gUUCGAcgCCcGGCGCgUCCGCGgCCUCg -3'
miRNA:   3'- -AAGUUcaGGuUCGCG-AGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 136895 0.66 0.821689
Target:  5'- ---uGGUgCAGGCGCggcgcggCgGCGUCCCg -3'
miRNA:   3'- aaguUCAgGUUCGCGa------GgCGCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 10612 0.66 0.821689
Target:  5'- gUCGcGUCCGgccggccgcuAGCGUUCagCGCGgCCCCg -3'
miRNA:   3'- aAGUuCAGGU----------UCGCGAG--GCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 81504 0.66 0.813006
Target:  5'- --gAAGgcgCCGAuGCGCUCgGCGUggUCCCu -3'
miRNA:   3'- aagUUCa--GGUU-CGCGAGgCGCA--GGGG- -5'
23563 5' -57.1 NC_005261.1 + 15364 0.67 0.804158
Target:  5'- ----cGUCCcggcGGCGCUCgGCGcCCUCg -3'
miRNA:   3'- aaguuCAGGu---UCGCGAGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 70839 0.67 0.804158
Target:  5'- ---uGGUCCuGGCGCgcgCgGCGUCUUCg -3'
miRNA:   3'- aaguUCAGGuUCGCGa--GgCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 99490 0.67 0.804158
Target:  5'- ---cGG-CC-AGCGCcgCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGuUCGCGa-GGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 123489 0.67 0.800574
Target:  5'- -cCAGGgacaCCGGGCGCaccagcggcagugCCGCGUCCgCu -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa------------GGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 123615 0.67 0.795152
Target:  5'- -gCAGGUUCAGGCugcccaucagccGCUgCGCGaucagCCCCa -3'
miRNA:   3'- aaGUUCAGGUUCG------------CGAgGCGCa----GGGG- -5'
23563 5' -57.1 NC_005261.1 + 91874 0.67 0.795152
Target:  5'- cUCGGcGUCCGucGCGCUCUGUugucuGcCCCCg -3'
miRNA:   3'- aAGUU-CAGGUu-CGCGAGGCG-----CaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 61744 0.67 0.795152
Target:  5'- -gCGAGcgCCGAGgGCUCgGgGUCCgCg -3'
miRNA:   3'- aaGUUCa-GGUUCgCGAGgCgCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 65842 0.67 0.791508
Target:  5'- -cCGAGUgCCGcgaguAGCGgUCCGCGgcggcuuguacagCCCCa -3'
miRNA:   3'- aaGUUCA-GGU-----UCGCgAGGCGCa------------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 124253 0.67 0.785998
Target:  5'- -gCAGGcgCCGcgcGGCGCcgcCCGCGcgCCCCg -3'
miRNA:   3'- aaGUUCa-GGU---UCGCGa--GGCGCa-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 74227 0.67 0.785998
Target:  5'- cUCGAGgcuauaauagCCGGGCGCgCCGaguaCGUCCCa -3'
miRNA:   3'- aAGUUCa---------GGUUCGCGaGGC----GCAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.