miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 74227 0.67 0.785998
Target:  5'- cUCGAGgcuauaauagCCGGGCGCgCCGaguaCGUCCCa -3'
miRNA:   3'- aAGUUCa---------GGUUCGCGaGGC----GCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 48918 0.67 0.785998
Target:  5'- -gCGAGcCCGGGCGCcagcgCCGCuGUCUCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGa----GGCG-CAGGGg -5'
23563 5' -57.1 NC_005261.1 + 127066 0.67 0.776704
Target:  5'- -aCGGGUCCAuGGUGCcgccgCCGCG-CCgCCg -3'
miRNA:   3'- aaGUUCAGGU-UCGCGa----GGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 70521 0.67 0.776704
Target:  5'- -aCGGGgacgaucgCCAcggcGGCGC-CCGCG-CCCCa -3'
miRNA:   3'- aaGUUCa-------GGU----UCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 1586 0.67 0.776704
Target:  5'- aUCGAGcUCCAGGCGgaCCagGCcUUCCCg -3'
miRNA:   3'- aAGUUC-AGGUUCGCgaGG--CGcAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 118119 0.67 0.776704
Target:  5'- -gCGGGcCCGcGCGCcuugCCGCGgaagCCCCc -3'
miRNA:   3'- aaGUUCaGGUuCGCGa---GGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 39592 0.67 0.776704
Target:  5'- -cCAGcgCCGAGCGC-CgCGCGcCCCCg -3'
miRNA:   3'- aaGUUcaGGUUCGCGaG-GCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 52419 0.67 0.767279
Target:  5'- --aAAGUCCucgaAGGCG-UCCGCGUCCa- -3'
miRNA:   3'- aagUUCAGG----UUCGCgAGGCGCAGGgg -5'
23563 5' -57.1 NC_005261.1 + 62905 0.67 0.767279
Target:  5'- --aAGGUCaCAGG-GCUCCGCGcgCCgCCg -3'
miRNA:   3'- aagUUCAG-GUUCgCGAGGCGCa-GG-GG- -5'
23563 5' -57.1 NC_005261.1 + 69938 0.67 0.757733
Target:  5'- --gAGGUCC--GCGC-CCGCGgccggggCCCCg -3'
miRNA:   3'- aagUUCAGGuuCGCGaGGCGCa------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 3486 0.68 0.748074
Target:  5'- -gCGGGUCgCGGGUGCcgucgccgagUCCGgGUCCCg -3'
miRNA:   3'- aaGUUCAG-GUUCGCG----------AGGCgCAGGGg -5'
23563 5' -57.1 NC_005261.1 + 73446 0.68 0.748074
Target:  5'- -cCAGG-CCGGcCGCgUCCGCGUCCgCg -3'
miRNA:   3'- aaGUUCaGGUUcGCG-AGGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 3524 0.68 0.748074
Target:  5'- -cCGGGUCUggGCGCgCCGCGgUCgCa -3'
miRNA:   3'- aaGUUCAGGuuCGCGaGGCGC-AGgGg -5'
23563 5' -57.1 NC_005261.1 + 36847 0.68 0.748074
Target:  5'- -cCGGGggCUAGcccGCGCUCCGCccgCCCCg -3'
miRNA:   3'- aaGUUCa-GGUU---CGCGAGGCGca-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 79492 0.68 0.745156
Target:  5'- gUUCAGGUCCAcgaaGGUgcuaaucaccuccaGCUCCGCGagcgggaCCCg -3'
miRNA:   3'- -AAGUUCAGGU----UCG--------------CGAGGCGCag-----GGG- -5'
23563 5' -57.1 NC_005261.1 + 25868 0.68 0.738313
Target:  5'- aUCGAGUCC-AGCaGCUUCaGCGcgCCCa -3'
miRNA:   3'- aAGUUCAGGuUCG-CGAGG-CGCa-GGGg -5'
23563 5' -57.1 NC_005261.1 + 57829 0.68 0.738313
Target:  5'- --gGGGUCCAcGUGCUCCGCGggCgCg -3'
miRNA:   3'- aagUUCAGGUuCGCGAGGCGCagGgG- -5'
23563 5' -57.1 NC_005261.1 + 41403 0.68 0.738313
Target:  5'- gUUAcGUCCGAGCGCgccaCGacgaGUCCCUu -3'
miRNA:   3'- aAGUuCAGGUUCGCGag--GCg---CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 64275 0.68 0.728459
Target:  5'- ---cGGcCCGGGCGCgccCCGCGUCUgCa -3'
miRNA:   3'- aaguUCaGGUUCGCGa--GGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 122863 0.68 0.727468
Target:  5'- -cCGAGggcgCCGAGCGCcgCCGgGacgucuuUCCCCu -3'
miRNA:   3'- aaGUUCa---GGUUCGCGa-GGCgC-------AGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.