miRNA display CGI


Results 61 - 80 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 37931 0.68 0.725485
Target:  5'- -gCGAGUaCGAGCGCcggagCCGCGUcgagcgggugcugcCCCCg -3'
miRNA:   3'- aaGUUCAgGUUCGCGa----GGCGCA--------------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 34714 0.68 0.71852
Target:  5'- cUCGAGcCUcAGCGgUCgGCGcCCCCu -3'
miRNA:   3'- aAGUUCaGGuUCGCgAGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 100054 0.68 0.71852
Target:  5'- cUCGAGcgcgCCGccgccgcccgggGGCGCgCCGCG-CCCCu -3'
miRNA:   3'- aAGUUCa---GGU------------UCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 12939 0.68 0.71852
Target:  5'- -gCGGGUCC-GGCGC-CCGCGgCCUg -3'
miRNA:   3'- aaGUUCAGGuUCGCGaGGCGCaGGGg -5'
23563 5' -57.1 NC_005261.1 + 61924 0.68 0.715523
Target:  5'- gUCGaaGGUgCAcaccuucgccacggGGCGCgcgccgaCCGCGUCCCCc -3'
miRNA:   3'- aAGU--UCAgGU--------------UCGCGa------GGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 89940 0.68 0.708506
Target:  5'- -cCGAGgCCucgcuggaagcGGCGCUUgcgCGCGUCCCCg -3'
miRNA:   3'- aaGUUCaGGu----------UCGCGAG---GCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 5592 0.68 0.708506
Target:  5'- -cUAGGgCCGccGCGC-CCGCGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUu-CGCGaGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 49975 0.68 0.708506
Target:  5'- gUCAuc-CCcGGCGCcgCCGuCGUCCCCc -3'
miRNA:   3'- aAGUucaGGuUCGCGa-GGC-GCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 39445 0.68 0.708506
Target:  5'- -gCAGGgccCCGAGC-CUCCGCGcggcgcggcgCCCCa -3'
miRNA:   3'- aaGUUCa--GGUUCGcGAGGCGCa---------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 32585 0.69 0.698428
Target:  5'- ----cGUCCGcGUcCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGUuCGcGAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 103933 0.69 0.698428
Target:  5'- gUC-GGUCU---CGCUCCcgGCGUCCCCg -3'
miRNA:   3'- aAGuUCAGGuucGCGAGG--CGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 137102 0.69 0.698428
Target:  5'- ----cGUCCGcGUcCUCCGCGUCCUCc -3'
miRNA:   3'- aaguuCAGGUuCGcGAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 105077 0.69 0.698428
Target:  5'- --aGGGUCCGc-CGaCUCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGUucGC-GAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 38700 0.69 0.697417
Target:  5'- -cCGGGcCCAAGCcggccagGC-CCGCGcCCCCa -3'
miRNA:   3'- aaGUUCaGGUUCG-------CGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 120732 0.69 0.697417
Target:  5'- -aCGAGcCCA--UGCUCCGCGUcuaggacCCCCg -3'
miRNA:   3'- aaGUUCaGGUucGCGAGGCGCA-------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 134856 0.69 0.688293
Target:  5'- -aCGGGgacaAGGCGC-CCGCGcCCCCg -3'
miRNA:   3'- aaGUUCagg-UUCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 31640 0.69 0.688293
Target:  5'- --gAGGUCCAGGaggaGCgCCGCGcggcggCCCCg -3'
miRNA:   3'- aagUUCAGGUUCg---CGaGGCGCa-----GGGG- -5'
23563 5' -57.1 NC_005261.1 + 108691 0.69 0.688293
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 4173 0.69 0.688293
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 132647 0.69 0.678111
Target:  5'- cUCGAGg-CGGGCGCccUCgGCGcCCCCa -3'
miRNA:   3'- aAGUUCagGUUCGCG--AGgCGCaGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.