miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 84248 0.7 0.616521
Target:  5'- -cCAGGUCgGGGCGCUUgGC--CCCCg -3'
miRNA:   3'- aaGUUCAGgUUCGCGAGgCGcaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 125299 0.7 0.616521
Target:  5'- -gCGGGcgCCGgacccgcgGGCGCUCCGCGgCCUCg -3'
miRNA:   3'- aaGUUCa-GGU--------UCGCGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 94449 0.7 0.637089
Target:  5'- ----cGUCC--GCG-UCCGCGUCCCCc -3'
miRNA:   3'- aaguuCAGGuuCGCgAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 93971 0.7 0.637089
Target:  5'- gUCGAcgCCAacAGCGC-CCGCGUCgCCg -3'
miRNA:   3'- aAGUUcaGGU--UCGCGaGGCGCAGgGG- -5'
23563 5' -57.1 NC_005261.1 + 60201 0.7 0.637089
Target:  5'- --gAAGUCCGcGCGCgcgcucccgCCGCGgggcgCCCCc -3'
miRNA:   3'- aagUUCAGGUuCGCGa--------GGCGCa----GGGG- -5'
23563 5' -57.1 NC_005261.1 + 97908 0.7 0.637089
Target:  5'- ----cGUCUggGCGCcggGCGUCCCCg -3'
miRNA:   3'- aaguuCAGGuuCGCGaggCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 13037 0.7 0.637089
Target:  5'- -aCGAG-CCAgGGCGCggggCCGCGcgcgCCCCu -3'
miRNA:   3'- aaGUUCaGGU-UCGCGa---GGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 45471 0.7 0.637089
Target:  5'- cUCGgcccGGUCCGagcggcgcgggcGGCGCU-CGCuGUCCCCg -3'
miRNA:   3'- aAGU----UCAGGU------------UCGCGAgGCG-CAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 104203 0.69 0.651481
Target:  5'- -aCGGcGUCCAGGCGCUCgCGCGcggcgcgcaccgugCCCUc -3'
miRNA:   3'- aaGUU-CAGGUUCGCGAG-GCGCa-------------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 19831 0.69 0.657641
Target:  5'- --aAAGUUCAGcGCGCgcgCgGCGUCCUCg -3'
miRNA:   3'- aagUUCAGGUU-CGCGa--GgCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 95921 0.69 0.657641
Target:  5'- cUCAcucgcGGUCCGacAGCGCcaugUCCGCGcCCgCCg -3'
miRNA:   3'- aAGU-----UCAGGU--UCGCG----AGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 70928 0.69 0.667891
Target:  5'- -gCGAGcUCCA-GCGcCUgCGCGUCCgCCg -3'
miRNA:   3'- aaGUUC-AGGUuCGC-GAgGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 135550 0.69 0.667891
Target:  5'- --aAAG-CCGGcGCGCcgCCGgGUCCCCa -3'
miRNA:   3'- aagUUCaGGUU-CGCGa-GGCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 105713 0.69 0.667891
Target:  5'- -cCGGGgCCGGGCGCggCGCGgaccCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGagGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 1195 0.69 0.667891
Target:  5'- -cCGGGgCCGGGCGCggCGCGgaccCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGagGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 31032 0.69 0.667891
Target:  5'- --aAAG-CCGGcGCGCcgCCGgGUCCCCa -3'
miRNA:   3'- aagUUCaGGUU-CGCGa-GGCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 28129 0.69 0.678111
Target:  5'- cUCGAGg-CGGGCGCccUCgGCGcCCCCa -3'
miRNA:   3'- aAGUUCagGUUCGCG--AGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 132647 0.69 0.678111
Target:  5'- cUCGAGg-CGGGCGCccUCgGCGcCCCCa -3'
miRNA:   3'- aAGUUCagGUUCGCG--AGgCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 4173 0.69 0.688293
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 31640 0.69 0.688293
Target:  5'- --gAGGUCCAGGaggaGCgCCGCGcggcggCCCCg -3'
miRNA:   3'- aagUUCAGGUUCg---CGaGGCGCa-----GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.