miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23563 5' -57.1 NC_005261.1 + 108691 0.69 0.688293
Target:  5'- -gCAGGUCCGGGCccgcgaGCUUCGCG-CUCUg -3'
miRNA:   3'- aaGUUCAGGUUCG------CGAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 108166 0.66 0.84666
Target:  5'- -gCGcGUCCGccagGGCGCgcggCCGCGgCUCCg -3'
miRNA:   3'- aaGUuCAGGU----UCGCGa---GGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 107640 0.66 0.853816
Target:  5'- cUCGAGcgCCc-GCGCugcgcgcgcaaacUCCGCGgCCCCg -3'
miRNA:   3'- aAGUUCa-GGuuCGCG-------------AGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 106735 0.66 0.838524
Target:  5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3'
miRNA:   3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 105713 0.69 0.667891
Target:  5'- -cCGGGgCCGGGCGCggCGCGgaccCCCCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGagGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 105292 0.66 0.821689
Target:  5'- -gCGAGcCCGGGCGCgcgagcgCgGgGUCCUCg -3'
miRNA:   3'- aaGUUCaGGUUCGCGa------GgCgCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 105187 0.73 0.421841
Target:  5'- -cCGAGUCCuGGCcCUCCGCGgacgCUCCg -3'
miRNA:   3'- aaGUUCAGGuUCGcGAGGCGCa---GGGG- -5'
23563 5' -57.1 NC_005261.1 + 105077 0.69 0.698428
Target:  5'- --aGGGUCCGc-CGaCUCCGCG-CCCCg -3'
miRNA:   3'- aagUUCAGGUucGC-GAGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 104453 0.7 0.596
Target:  5'- -gCGGGgCCcAGCGCUcgCCGCGggCCCCg -3'
miRNA:   3'- aaGUUCaGGuUCGCGA--GGCGCa-GGGG- -5'
23563 5' -57.1 NC_005261.1 + 104203 0.69 0.651481
Target:  5'- -aCGGcGUCCAGGCGCUCgCGCGcggcgcgcaccgugCCCUc -3'
miRNA:   3'- aaGUU-CAGGUUCGCGAG-GCGCa-------------GGGG- -5'
23563 5' -57.1 NC_005261.1 + 103933 0.69 0.698428
Target:  5'- gUC-GGUCU---CGCUCCcgGCGUCCCCg -3'
miRNA:   3'- aAGuUCAGGuucGCGAGG--CGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 103809 0.66 0.84666
Target:  5'- -gCAGGggCAGGCGCgggCCGCGcgccaCCCg -3'
miRNA:   3'- aaGUUCagGUUCGCGa--GGCGCag---GGG- -5'
23563 5' -57.1 NC_005261.1 + 103680 0.66 0.837699
Target:  5'- -gCGAGgCCGAGCGC-CCGUuuauagcggccacGUCaCCCa -3'
miRNA:   3'- aaGUUCaGGUUCGCGaGGCG-------------CAG-GGG- -5'
23563 5' -57.1 NC_005261.1 + 103332 0.72 0.505739
Target:  5'- -gCGcGUCCAGGCGCcgguacagcUCCGCGcgccgcUCCCCc -3'
miRNA:   3'- aaGUuCAGGUUCGCG---------AGGCGC------AGGGG- -5'
23563 5' -57.1 NC_005261.1 + 103246 0.71 0.545285
Target:  5'- ----cGUCCGcGCGC-CCGCGUCCgCg -3'
miRNA:   3'- aaguuCAGGUuCGCGaGGCGCAGGgG- -5'
23563 5' -57.1 NC_005261.1 + 102575 0.66 0.85224
Target:  5'- cUCGccGUCCGcgucGGCGgccucgcccgcgccUUCCGCGUCCUCg -3'
miRNA:   3'- aAGUu-CAGGU----UCGC--------------GAGGCGCAGGGG- -5'
23563 5' -57.1 NC_005261.1 + 102520 0.66 0.830197
Target:  5'- -gCAGGUCCGcgugcagcuuGGcCGC-CUGCGgCCCCa -3'
miRNA:   3'- aaGUUCAGGU----------UC-GCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 100054 0.68 0.71852
Target:  5'- cUCGAGcgcgCCGccgccgcccgggGGCGCgCCGCG-CCCCu -3'
miRNA:   3'- aAGUUCa---GGU------------UCGCGaGGCGCaGGGG- -5'
23563 5' -57.1 NC_005261.1 + 99490 0.67 0.804158
Target:  5'- ---cGG-CC-AGCGCcgCCGCGUCCuCCg -3'
miRNA:   3'- aaguUCaGGuUCGCGa-GGCGCAGG-GG- -5'
23563 5' -57.1 NC_005261.1 + 99209 0.72 0.483561
Target:  5'- gUUCAGGUCCGaggacaccgcggcaGGCGCgUCgGCGUCgcgCCCg -3'
miRNA:   3'- -AAGUUCAGGU--------------UCGCG-AGgCGCAG---GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.