miRNA display CGI


Results 81 - 100 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 56400 0.66 0.651302
Target:  5'- gGGGCCCuggGCGccCUGCgCUUCgCgGCGCa -3'
miRNA:   3'- -UCCGGG---CGCauGGCGaGAAG-GgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 6249 0.66 0.651302
Target:  5'- aGGGCCUGCccgccCCGCggggCggCCCGcCGCc -3'
miRNA:   3'- -UCCGGGCGcau--GGCGa---GaaGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 46250 0.66 0.651302
Target:  5'- cAGGCCgCgGCGgcgGCCGCgacCgugUCCCcgggGCGCu -3'
miRNA:   3'- -UCCGG-G-CGCa--UGGCGa--Ga--AGGG----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 17774 0.66 0.651302
Target:  5'- cGGGCCCGUcUAUCGCggagagcaggCgcaCgCCGCGCa -3'
miRNA:   3'- -UCCGGGCGcAUGGCGa---------Gaa-G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 68675 0.66 0.651302
Target:  5'- -cGCCgGCGUccGCCGCgugggggCCgGCGCg -3'
miRNA:   3'- ucCGGgCGCA--UGGCGagaa---GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 54380 0.66 0.651302
Target:  5'- cGGCCCagcccaGCGggGCCGCgg--CCCGCcaGCg -3'
miRNA:   3'- uCCGGG------CGCa-UGGCGagaaGGGCG--CG- -5'
23564 3' -61.4 NC_005261.1 + 99197 0.66 0.651302
Target:  5'- cGGaucaCCGCGUggaGCUGCUCgcggacgCuCUGCGCg -3'
miRNA:   3'- uCCg---GGCGCA---UGGCGAGaa-----G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 87821 0.66 0.651302
Target:  5'- cGGCCCGCGacgcggggcUGCCGgC-CUUCgCGaCGUa -3'
miRNA:   3'- uCCGGGCGC---------AUGGC-GaGAAGgGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 60559 0.66 0.651302
Target:  5'- cGGCCCGU---CCGCgc--CCUGCGCc -3'
miRNA:   3'- uCCGGGCGcauGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 83858 0.66 0.651302
Target:  5'- cGGGCgCCcCGaGCCGCUg--CCCGCGg -3'
miRNA:   3'- -UCCG-GGcGCaUGGCGAgaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 133391 0.66 0.651302
Target:  5'- gAGGCUgcggCGCGgacGCCGCcg--CCUGCGCc -3'
miRNA:   3'- -UCCGG----GCGCa--UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 63870 0.66 0.651302
Target:  5'- gGGGCggaCGCG-GCCGCccCUUCcgccgCCGCGCc -3'
miRNA:   3'- -UCCGg--GCGCaUGGCGa-GAAG-----GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 19035 0.66 0.650314
Target:  5'- cGGGCgCGCGguagACUcucgguccggcggGCUCUcggcgaaaaacUCUCGCGCg -3'
miRNA:   3'- -UCCGgGCGCa---UGG-------------CGAGA-----------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 1195 0.66 0.649325
Target:  5'- cGGUCCGCccuccaccgacGCCGUUCUgcuggCCGCGCu -3'
miRNA:   3'- uCCGGGCGca---------UGGCGAGAag---GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 64118 0.66 0.642405
Target:  5'- cGGGCggcacgugCCGCGcgGCCGCcagCgcguccuggcccagCCCGCGCa -3'
miRNA:   3'- -UCCG--------GGCGCa-UGGCGa--Gaa------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 77942 0.66 0.641415
Target:  5'- -uGCCUGCGgGCCGCgggggCggacCCCGgGCg -3'
miRNA:   3'- ucCGGGCGCaUGGCGa----Gaa--GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 73729 0.66 0.641415
Target:  5'- -cGCCCGCGgGCCcCgagcaCCCGCGCc -3'
miRNA:   3'- ucCGGGCGCaUGGcGagaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 26793 0.66 0.641415
Target:  5'- cGGCUCGcCGgucguCCGuCUCUUgCCCGCcgGCg -3'
miRNA:   3'- uCCGGGC-GCau---GGC-GAGAA-GGGCG--CG- -5'
23564 3' -61.4 NC_005261.1 + 3205 0.66 0.641415
Target:  5'- cGGCCuCGCcgccgcgGCCGCgugCgggCCCGcCGCg -3'
miRNA:   3'- uCCGG-GCGca-----UGGCGa--Gaa-GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 102423 0.66 0.641415
Target:  5'- gGGGCCgGgGUccagGCCGU----CCCGCGCc -3'
miRNA:   3'- -UCCGGgCgCA----UGGCGagaaGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.