miRNA display CGI


Results 61 - 80 of 684 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 42072 0.66 0.661174
Target:  5'- uGGGCaCgCGCGgcacgACgGC-CUUCUCGUGCc -3'
miRNA:   3'- -UCCG-G-GCGCa----UGgCGaGAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136277 0.66 0.661174
Target:  5'- cAGGCgcacguguacCUGCGcGCCGCggugCUgCCCGCGg -3'
miRNA:   3'- -UCCG----------GGCGCaUGGCGa---GAaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 121963 0.66 0.661174
Target:  5'- -aGCUCGcCGUGCCGCgc-UCCaGCGCc -3'
miRNA:   3'- ucCGGGC-GCAUGGCGagaAGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 104787 0.66 0.661174
Target:  5'- cAGGCCgcgauCGCGUGCUccaGCgggUCCCGCuccGCa -3'
miRNA:   3'- -UCCGG-----GCGCAUGG---CGagaAGGGCG---CG- -5'
23564 3' -61.4 NC_005261.1 + 15184 0.66 0.661174
Target:  5'- cGGcGCCCGCGggaaacGCCGC-Ca--UCGCGCg -3'
miRNA:   3'- -UC-CGGGCGCa-----UGGCGaGaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 16348 0.66 0.661174
Target:  5'- -uGCCCGcCGgcuCCGUccUCUUCCC-CGCc -3'
miRNA:   3'- ucCGGGC-GCau-GGCG--AGAAGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 118827 0.66 0.661174
Target:  5'- uGGGCgCgGCacUGCCGCUCUg-CgGCGCg -3'
miRNA:   3'- -UCCG-GgCGc-AUGGCGAGAagGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 34425 0.66 0.661174
Target:  5'- cGGCCCGCGccUGCCcCUgCUgCCgaaCGCGCc -3'
miRNA:   3'- uCCGGGCGC--AUGGcGA-GAaGG---GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 31760 0.66 0.661174
Target:  5'- cAGGCgcacguguacCUGCGcGCCGCggugCUgCCCGCGg -3'
miRNA:   3'- -UCCG----------GGCGCaUGGCGa---GAaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 69629 0.66 0.661174
Target:  5'- cGGCaCgGCGUG-CGCUa--CCUGCGCg -3'
miRNA:   3'- uCCG-GgCGCAUgGCGAgaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 87026 0.66 0.661174
Target:  5'- cGGcCCCGCGcgccACCGCg--UCCaggcuGCGCa -3'
miRNA:   3'- uCC-GGGCGCa---UGGCGagaAGGg----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 63622 0.66 0.661174
Target:  5'- aAGGCCgGCGcgaugaaguuCCGCUCgUCCgGCa- -3'
miRNA:   3'- -UCCGGgCGCau--------GGCGAGaAGGgCGcg -5'
23564 3' -61.4 NC_005261.1 + 3364 0.66 0.661174
Target:  5'- gGGGCCCGCGggGgCGCgggCgccuugUCCC-CGUc -3'
miRNA:   3'- -UCCGGGCGCa-UgGCGa--Ga-----AGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 126718 0.66 0.659201
Target:  5'- uGGUUCGCGUGCgCGUUCaaguccaagcgUCCGCGUc -3'
miRNA:   3'- uCCGGGCGCAUG-GCGAGaa---------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 36582 0.66 0.658214
Target:  5'- gGGGCCCGCcgcgGCCaccgggggggggcaGCgc-UCCUGCGCc -3'
miRNA:   3'- -UCCGGGCGca--UGG--------------CGagaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 63654 0.66 0.65229
Target:  5'- -cGUCCGCGUccCCGUUCaccaugggcgggucCCCGCGCg -3'
miRNA:   3'- ucCGGGCGCAu-GGCGAGaa------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133391 0.66 0.651302
Target:  5'- gAGGCUgcggCGCGgacGCCGCcg--CCUGCGCc -3'
miRNA:   3'- -UCCGG----GCGCa--UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 99197 0.66 0.651302
Target:  5'- cGGaucaCCGCGUggaGCUGCUCgcggacgCuCUGCGCg -3'
miRNA:   3'- uCCg---GGCGCA---UGGCGAGaa-----G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 41018 0.66 0.651302
Target:  5'- cAGcGCCUccgaGCGUgGCCGCggcgCUUCCgGcCGCg -3'
miRNA:   3'- -UC-CGGG----CGCA-UGGCGa---GAAGGgC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 87821 0.66 0.651302
Target:  5'- cGGCCCGCGacgcggggcUGCCGgC-CUUCgCGaCGUa -3'
miRNA:   3'- uCCGGGCGC---------AUGGC-GaGAAGgGC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.