miRNA display CGI


Results 61 - 80 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 14384 0.67 0.569483
Target:  5'- uGGCCCGCaucGCCagacgcuucucucaGUUCcUCUCGCGCg -3'
miRNA:   3'- uCCGGGCGca-UGG--------------CGAGaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 14776 0.68 0.562662
Target:  5'- gGGGgCCGCcccgcgcagGUGCCGCUCccgcaggCUGCGCa -3'
miRNA:   3'- -UCCgGGCG---------CAUGGCGAGaag----GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 14777 0.7 0.450595
Target:  5'- gAGGCCCGCG-ACgGCg--UCauGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUGgCGagaAGggCGCG- -5'
23564 3' -61.4 NC_005261.1 + 14993 0.73 0.26708
Target:  5'- gGGGCCCGCGccugggcgGCCGCUaggcggcaggCCGCGCu -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGAgaag------GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 15184 0.66 0.661174
Target:  5'- cGGcGCCCGCGggaaacGCCGC-Ca--UCGCGCg -3'
miRNA:   3'- -UC-CGGGCGCa-----UGGCGaGaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 15979 0.75 0.229089
Target:  5'- aGGGCCCGg--GCCGCUCa-CCCGgGCa -3'
miRNA:   3'- -UCCGGGCgcaUGGCGAGaaGGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 16059 0.68 0.552958
Target:  5'- cGGGCCCGC--GCCGag---CCgGCGCg -3'
miRNA:   3'- -UCCGGGCGcaUGGCgagaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 16348 0.66 0.661174
Target:  5'- -uGCCCGcCGgcuCCGUccUCUUCCC-CGCc -3'
miRNA:   3'- ucCGGGC-GCau-GGCG--AGAAGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 17033 0.68 0.533707
Target:  5'- cGGCCCGCGgccccggGCCcgGCccCggcCCCGUGCa -3'
miRNA:   3'- uCCGGGCGCa------UGG--CGa-Gaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 17072 0.66 0.67004
Target:  5'- gAGcGCCCGgGcaacccUACCcgguccuacucgcGCUCgcgCCCGCGCc -3'
miRNA:   3'- -UC-CGGGCgC------AUGG-------------CGAGaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 17258 0.71 0.354936
Target:  5'- gGGGCCUGCGgcgGCacgcgccccgcggggCGCgagccuccacCUUCCCGCGCc -3'
miRNA:   3'- -UCCGGGCGCa--UG---------------GCGa---------GAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 17774 0.66 0.651302
Target:  5'- cGGGCCCGUcUAUCGCggagagcaggCgcaCgCCGCGCa -3'
miRNA:   3'- -UCCGGGCGcAUGGCGa---------Gaa-G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 17825 0.66 0.680845
Target:  5'- cAGGCCgcucaGCGcagacGCCGCUCUgCUCgguGCGCg -3'
miRNA:   3'- -UCCGGg----CGCa----UGGCGAGAaGGG---CGCG- -5'
23564 3' -61.4 NC_005261.1 + 18521 0.69 0.505298
Target:  5'- -aGCCCGCGUcaaugACgGCggcgUCCCGCGg -3'
miRNA:   3'- ucCGGGCGCA-----UGgCGaga-AGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 19035 0.66 0.650314
Target:  5'- cGGGCgCGCGguagACUcucgguccggcggGCUCUcggcgaaaaacUCUCGCGCg -3'
miRNA:   3'- -UCCGgGCGCa---UGG-------------CGAGA-----------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 19283 0.68 0.514699
Target:  5'- uGGCCaCGUGcGCCGCggccagCCGCGCg -3'
miRNA:   3'- uCCGG-GCGCaUGGCGagaag-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 19374 0.68 0.514699
Target:  5'- cAGGgCCGCGggcgcGCCGCcCU--CCGCGCc -3'
miRNA:   3'- -UCCgGGCGCa----UGGCGaGAagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 19411 0.71 0.391124
Target:  5'- cGGCCCGUGUGCCGCg---CCgaaGuCGCc -3'
miRNA:   3'- uCCGGGCGCAUGGCGagaaGGg--C-GCG- -5'
23564 3' -61.4 NC_005261.1 + 19536 0.71 0.383055
Target:  5'- cGGCCCGCGUcACCGC-CagCgCCGUGg -3'
miRNA:   3'- uCCGGGCGCA-UGGCGaGaaG-GGCGCg -5'
23564 3' -61.4 NC_005261.1 + 19658 0.66 0.639437
Target:  5'- cGGCgCGCGccGCCGCgcgCgcgggcacggcgUCCuCGCGCg -3'
miRNA:   3'- uCCGgGCGCa-UGGCGa--Ga-----------AGG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.