miRNA display CGI


Results 41 - 60 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 10176 0.66 0.641415
Target:  5'- cGGCuccugCCGCcucUGCCGCUCgcccgaCCGCGUg -3'
miRNA:   3'- uCCG-----GGCGc--AUGGCGAGaag---GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 10218 0.77 0.155657
Target:  5'- aGGGCCCGCGccUGCCcagGCggg-CCCGCGCa -3'
miRNA:   3'- -UCCGGGCGC--AUGG---CGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 10383 0.67 0.611745
Target:  5'- uGGCgCCGCG-ACCGCcCcgUCCGCuGCu -3'
miRNA:   3'- uCCG-GGCGCaUGGCGaGaaGGGCG-CG- -5'
23564 3' -61.4 NC_005261.1 + 10429 0.7 0.407592
Target:  5'- cGGCCCGCc-GCCGCggCgccggCCCGcCGCu -3'
miRNA:   3'- uCCGGGCGcaUGGCGa-Gaa---GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 10485 0.67 0.601874
Target:  5'- cGGCCCGCuGcACCgGCUU-UUgCGCGCg -3'
miRNA:   3'- uCCGGGCG-CaUGG-CGAGaAGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 10489 0.67 0.601874
Target:  5'- cGGCCCGCucccGCCGCcaacgC-UCCCGCu- -3'
miRNA:   3'- uCCGGGCGca--UGGCGa----GaAGGGCGcg -5'
23564 3' -61.4 NC_005261.1 + 10523 0.69 0.47756
Target:  5'- cGGGcCCCGCG-GCgCGCUCgcugucgCCCccgGCGCg -3'
miRNA:   3'- -UCC-GGGCGCaUG-GCGAGaa-----GGG---CGCG- -5'
23564 3' -61.4 NC_005261.1 + 10525 0.69 0.468481
Target:  5'- cAGGCCaCGCGca--GCUCcUCCgGCGCc -3'
miRNA:   3'- -UCCGG-GCGCauggCGAGaAGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 10888 0.74 0.234537
Target:  5'- cGGGCCCaGCGccccGCCGCUCcggccCCCGCGg -3'
miRNA:   3'- -UCCGGG-CGCa---UGGCGAGaa---GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 10950 0.72 0.337014
Target:  5'- gGGGCCCgcccccagacGCGUggGCCGCccCgcCCCGCGCc -3'
miRNA:   3'- -UCCGGG----------CGCA--UGGCGa-GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 10972 0.68 0.547159
Target:  5'- cGGGCCCGcCGUAgCGCUggaggggggggaaggCUUUuucgaCGCGCg -3'
miRNA:   3'- -UCCGGGC-GCAUgGCGA---------------GAAGg----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 11271 0.72 0.308631
Target:  5'- cGGUUCGCGcUGCCGCc---CCCGCGCc -3'
miRNA:   3'- uCCGGGCGC-AUGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 11584 0.66 0.641415
Target:  5'- uGGCCgGCGUACaggCGCaUUUUCUggcagagcugCGCGCg -3'
miRNA:   3'- uCCGGgCGCAUG---GCG-AGAAGG----------GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 11939 0.77 0.159543
Target:  5'- cGGCCCGCGccgcgGCgGCUCgcCCgGCGCg -3'
miRNA:   3'- uCCGGGCGCa----UGgCGAGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 12132 0.67 0.601874
Target:  5'- uGGcGCCCGCc-GCCGCggcggCCGCGCa -3'
miRNA:   3'- -UC-CGGGCGcaUGGCGagaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 12504 0.69 0.468481
Target:  5'- uGGCCCcccggGCG-ACCGCgcggggcCCCGCGCc -3'
miRNA:   3'- uCCGGG-----CGCaUGGCGagaa---GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 12931 0.66 0.641415
Target:  5'- gAGcGCCCGCGgguCCgGCg---CCCGCGg -3'
miRNA:   3'- -UC-CGGGCGCau-GG-CGagaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 13302 0.71 0.35952
Target:  5'- cAGcGCgCGCGgcggagccuCCGCggCUUCCCGCGUg -3'
miRNA:   3'- -UC-CGgGCGCau-------GGCGa-GAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 13801 0.7 0.433089
Target:  5'- gGGGUCCcaaGCGUcgGCCgGCUCgaCCCGCaGCg -3'
miRNA:   3'- -UCCGGG---CGCA--UGG-CGAGaaGGGCG-CG- -5'
23564 3' -61.4 NC_005261.1 + 13969 0.68 0.552958
Target:  5'- cGGGCgCGCGggcggcGCCGCgcggCgccugCCCGCGg -3'
miRNA:   3'- -UCCGgGCGCa-----UGGCGa---Gaa---GGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.