miRNA display CGI


Results 41 - 60 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 66239 0.66 0.671024
Target:  5'- aAGGCCagggGCGacgcugcgcaccUGCCGCgcgCUccgcgcCCCGCGCc -3'
miRNA:   3'- -UCCGGg---CGC------------AUGGCGa--GAa-----GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 9888 0.66 0.641415
Target:  5'- -cGCgCGCGgggUGCCGCUCUcggagCCCcCGCa -3'
miRNA:   3'- ucCGgGCGC---AUGGCGAGAa----GGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 99197 0.66 0.651302
Target:  5'- cGGaucaCCGCGUggaGCUGCUCgcggacgCuCUGCGCg -3'
miRNA:   3'- uCCg---GGCGCA---UGGCGAGaa-----G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 83858 0.66 0.651302
Target:  5'- cGGGCgCCcCGaGCCGCUg--CCCGCGg -3'
miRNA:   3'- -UCCG-GGcGCaUGGCGAgaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 93469 0.66 0.661174
Target:  5'- cGGCucCCGCu--CCGCUCccgggUCgCGCGCa -3'
miRNA:   3'- uCCG--GGCGcauGGCGAGa----AGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 41018 0.66 0.651302
Target:  5'- cAGcGCCUccgaGCGUgGCCGCggcgCUUCCgGcCGCg -3'
miRNA:   3'- -UC-CGGG----CGCA-UGGCGa---GAAGGgC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 87821 0.66 0.651302
Target:  5'- cGGCCCGCGacgcggggcUGCCGgC-CUUCgCGaCGUa -3'
miRNA:   3'- uCCGGGCGC---------AUGGC-GaGAAGgGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 3364 0.66 0.661174
Target:  5'- gGGGCCCGCGggGgCGCgggCgccuugUCCC-CGUc -3'
miRNA:   3'- -UCCGGGCGCa-UgGCGa--Ga-----AGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 26657 0.66 0.631522
Target:  5'- cGGCCU-CGaGCUGCUCUg-CCGCGUc -3'
miRNA:   3'- uCCGGGcGCaUGGCGAGAagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 68684 0.66 0.67004
Target:  5'- gGGGCCgccguccccagcgCGCGcGCCaGCg---CCCGCGCc -3'
miRNA:   3'- -UCCGG-------------GCGCaUGG-CGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136277 0.66 0.661174
Target:  5'- cAGGCgcacguguacCUGCGcGCCGCggugCUgCCCGCGg -3'
miRNA:   3'- -UCCG----------GGCGCaUGGCGa---GAaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 90038 0.66 0.631522
Target:  5'- cGGCCCGCGccCUGUUugccCUUCCCcCGUc -3'
miRNA:   3'- uCCGGGCGCauGGCGA----GAAGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 60559 0.66 0.651302
Target:  5'- cGGCCCGU---CCGCgc--CCUGCGCc -3'
miRNA:   3'- uCCGGGCGcauGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 23890 0.66 0.631522
Target:  5'- cGGCCaCGC--GCCGCUCgagccagUCCaccuuGCGCc -3'
miRNA:   3'- uCCGG-GCGcaUGGCGAGa------AGGg----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 26793 0.66 0.641415
Target:  5'- cGGCUCGcCGgucguCCGuCUCUUgCCCGCcgGCg -3'
miRNA:   3'- uCCGGGC-GCau---GGC-GAGAA-GGGCG--CG- -5'
23564 3' -61.4 NC_005261.1 + 106407 0.66 0.631522
Target:  5'- cGGCgCGCGccagcgcgcGCCGCUCaggCCaGCGCg -3'
miRNA:   3'- uCCGgGCGCa--------UGGCGAGaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 99687 0.66 0.671024
Target:  5'- uGGCCgCGCGccGgCGCUgUgCCCgGCGCg -3'
miRNA:   3'- uCCGG-GCGCa-UgGCGAgAaGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 133391 0.66 0.651302
Target:  5'- gAGGCUgcggCGCGgacGCCGCcg--CCUGCGCc -3'
miRNA:   3'- -UCCGG----GCGCa--UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 87210 0.66 0.641415
Target:  5'- -aGCgCCGgGUGgCGCUCgccgagcUCCCGcCGCg -3'
miRNA:   3'- ucCG-GGCgCAUgGCGAGa------AGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 114694 0.66 0.641415
Target:  5'- cGGCuccugCCGCcucUGCCGCUCgcccgaCCGCGUg -3'
miRNA:   3'- uCCG-----GGCGc--AUGGCGAGaag---GGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.