miRNA display CGI


Results 21 - 40 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 23890 0.66 0.631522
Target:  5'- cGGCCaCGC--GCCGCUCgagccagUCCaccuuGCGCc -3'
miRNA:   3'- uCCGG-GCGcaUGGCGAGa------AGGg----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 17774 0.66 0.651302
Target:  5'- cGGGCCCGUcUAUCGCggagagcaggCgcaCgCCGCGCa -3'
miRNA:   3'- -UCCGGGCGcAUGGCGa---------Gaa-G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 12931 0.66 0.641415
Target:  5'- gAGcGCCCGCGgguCCgGCg---CCCGCGg -3'
miRNA:   3'- -UC-CGGGCGCau-GG-CGagaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 120598 0.66 0.630533
Target:  5'- cGGCCuCGCGaucgcuuugcuagUGCUGCUgUUCUCGCu- -3'
miRNA:   3'- uCCGG-GCGC-------------AUGGCGAgAAGGGCGcg -5'
23564 3' -61.4 NC_005261.1 + 74505 0.66 0.641415
Target:  5'- cGGCCaUGCGcacGCCGCUCacggaCCUGgGCa -3'
miRNA:   3'- uCCGG-GCGCa--UGGCGAGaa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 65107 0.66 0.638448
Target:  5'- cGGCCCGgGgACCGCgcggacgcgggcuuUCUggcCgCCGUGCg -3'
miRNA:   3'- uCCGGGCgCaUGGCG--------------AGAa--G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136877 0.66 0.631522
Target:  5'- aGGGCCCGCGggagaCGCUggUgCagGCGCg -3'
miRNA:   3'- -UCCGGGCGCaug--GCGAgaAgGg-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 87210 0.66 0.641415
Target:  5'- -aGCgCCGgGUGgCGCUCgccgagcUCCCGcCGCg -3'
miRNA:   3'- ucCG-GGCgCAUgGCGAGa------AGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 102423 0.66 0.641415
Target:  5'- gGGGCCgGgGUccagGCCGU----CCCGCGCc -3'
miRNA:   3'- -UCCGGgCgCA----UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 90038 0.66 0.631522
Target:  5'- cGGCCCGCGccCUGUUugccCUUCCCcCGUc -3'
miRNA:   3'- uCCGGGCGCauGGCGA----GAAGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 106407 0.66 0.631522
Target:  5'- cGGCgCGCGccagcgcgcGCCGCUCaggCCaGCGCg -3'
miRNA:   3'- uCCGgGCGCa--------UGGCGAGaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 9888 0.66 0.641415
Target:  5'- -cGCgCGCGgggUGCCGCUCUcggagCCCcCGCa -3'
miRNA:   3'- ucCGgGCGC---AUGGCGAGAa----GGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 3364 0.66 0.661174
Target:  5'- gGGGCCCGCGggGgCGCgggCgccuugUCCC-CGUc -3'
miRNA:   3'- -UCCGGGCGCa-UgGCGa--Ga-----AGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 133391 0.66 0.651302
Target:  5'- gAGGCUgcggCGCGgacGCCGCcg--CCUGCGCc -3'
miRNA:   3'- -UCCGG----GCGCa--UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 26657 0.66 0.631522
Target:  5'- cGGCCU-CGaGCUGCUCUg-CCGCGUc -3'
miRNA:   3'- uCCGGGcGCaUGGCGAGAagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 114694 0.66 0.641415
Target:  5'- cGGCuccugCCGCcucUGCCGCUCgcccgaCCGCGUg -3'
miRNA:   3'- uCCG-----GGCGc--AUGGCGAGaag---GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 102302 0.66 0.641415
Target:  5'- gGGcGCCCGCuggGCUGCggcgCUggggCCGCGCu -3'
miRNA:   3'- -UC-CGGGCGca-UGGCGa---GAag--GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 60559 0.66 0.651302
Target:  5'- cGGCCCGU---CCGCgc--CCUGCGCc -3'
miRNA:   3'- uCCGGGCGcauGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 42072 0.66 0.661174
Target:  5'- uGGGCaCgCGCGgcacgACgGC-CUUCUCGUGCc -3'
miRNA:   3'- -UCCG-G-GCGCa----UGgCGaGAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 54380 0.66 0.651302
Target:  5'- cGGCCCagcccaGCGggGCCGCgg--CCCGCcaGCg -3'
miRNA:   3'- uCCGGG------CGCa-UGGCGagaaGGGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.