Results 1 - 20 of 684 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23564 | 3' | -61.4 | NC_005261.1 | + | 87210 | 0.66 | 0.641415 |
Target: 5'- -aGCgCCGgGUGgCGCUCgccgagcUCCCGcCGCg -3' miRNA: 3'- ucCG-GGCgCAUgGCGAGa------AGGGC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 120598 | 0.66 | 0.630533 |
Target: 5'- cGGCCuCGCGaucgcuuugcuagUGCUGCUgUUCUCGCu- -3' miRNA: 3'- uCCGG-GCGC-------------AUGGCGAgAAGGGCGcg -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 114694 | 0.66 | 0.641415 |
Target: 5'- cGGCuccugCCGCcucUGCCGCUCgcccgaCCGCGUg -3' miRNA: 3'- uCCG-----GGCGc--AUGGCGAGaag---GGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 26657 | 0.66 | 0.631522 |
Target: 5'- cGGCCU-CGaGCUGCUCUg-CCGCGUc -3' miRNA: 3'- uCCGGGcGCaUGGCGAGAagGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 54574 | 0.66 | 0.631522 |
Target: 5'- cAGGCgCGCGUccgccucacGCCGCUgacguacgcgCUggacCUCGCGCu -3' miRNA: 3'- -UCCGgGCGCA---------UGGCGA----------GAa---GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 136877 | 0.66 | 0.631522 |
Target: 5'- aGGGCCCGCGggagaCGCUggUgCagGCGCg -3' miRNA: 3'- -UCCGGGCGCaug--GCGAgaAgGg-CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 23890 | 0.66 | 0.631522 |
Target: 5'- cGGCCaCGC--GCCGCUCgagccagUCCaccuuGCGCc -3' miRNA: 3'- uCCGG-GCGcaUGGCGAGa------AGGg----CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 65107 | 0.66 | 0.638448 |
Target: 5'- cGGCCCGgGgACCGCgcggacgcgggcuuUCUggcCgCCGUGCg -3' miRNA: 3'- uCCGGGCgCaUGGCG--------------AGAa--G-GGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 19658 | 0.66 | 0.639437 |
Target: 5'- cGGCgCGCGccGCCGCgcgCgcgggcacggcgUCCuCGCGCg -3' miRNA: 3'- uCCGgGCGCa-UGGCGa--Ga-----------AGG-GCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 106407 | 0.66 | 0.631522 |
Target: 5'- cGGCgCGCGccagcgcgcGCCGCUCaggCCaGCGCg -3' miRNA: 3'- uCCGgGCGCa--------UGGCGAGaa-GGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 74505 | 0.66 | 0.641415 |
Target: 5'- cGGCCaUGCGcacGCCGCUCacggaCCUGgGCa -3' miRNA: 3'- uCCGG-GCGCa--UGGCGAGaa---GGGCgCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 69938 | 0.66 | 0.629544 |
Target: 5'- gAGGUCCGCGc-CCGCggccggggcCCCGcCGCg -3' miRNA: 3'- -UCCGGGCGCauGGCGagaa-----GGGC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 90038 | 0.66 | 0.631522 |
Target: 5'- cGGCCCGCGccCUGUUugccCUUCCCcCGUc -3' miRNA: 3'- uCCGGGCGCauGGCGA----GAAGGGcGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 102302 | 0.66 | 0.641415 |
Target: 5'- gGGcGCCCGCuggGCUGCggcgCUggggCCGCGCu -3' miRNA: 3'- -UC-CGGGCGca-UGGCGa---GAag--GGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 118032 | 0.66 | 0.631522 |
Target: 5'- gGGGCCUuugGCGgccCCGCUUcgCCUGCuGCc -3' miRNA: 3'- -UCCGGG---CGCau-GGCGAGaaGGGCG-CG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 4845 | 0.66 | 0.631522 |
Target: 5'- uGGGCCgCGCGc-CCGUggg-CCgCGCGCa -3' miRNA: 3'- -UCCGG-GCGCauGGCGagaaGG-GCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 3205 | 0.66 | 0.641415 |
Target: 5'- cGGCCuCGCcgccgcgGCCGCgugCgggCCCGcCGCg -3' miRNA: 3'- uCCGG-GCGca-----UGGCGa--Gaa-GGGC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 102423 | 0.66 | 0.641415 |
Target: 5'- gGGGCCgGgGUccagGCCGU----CCCGCGCc -3' miRNA: 3'- -UCCGGgCgCA----UGGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 11584 | 0.66 | 0.641415 |
Target: 5'- uGGCCgGCGUACaggCGCaUUUUCUggcagagcugCGCGCg -3' miRNA: 3'- uCCGGgCGCAUG---GCG-AGAAGG----------GCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 60318 | 0.66 | 0.631522 |
Target: 5'- cGGCCCGCa-GCUgGCUCaccUCCUGCuGCa -3' miRNA: 3'- uCCGGGCGcaUGG-CGAGa--AGGGCG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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