miRNA display CGI


Results 1 - 20 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 87210 0.66 0.641415
Target:  5'- -aGCgCCGgGUGgCGCUCgccgagcUCCCGcCGCg -3'
miRNA:   3'- ucCG-GGCgCAUgGCGAGa------AGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 120598 0.66 0.630533
Target:  5'- cGGCCuCGCGaucgcuuugcuagUGCUGCUgUUCUCGCu- -3'
miRNA:   3'- uCCGG-GCGC-------------AUGGCGAgAAGGGCGcg -5'
23564 3' -61.4 NC_005261.1 + 114694 0.66 0.641415
Target:  5'- cGGCuccugCCGCcucUGCCGCUCgcccgaCCGCGUg -3'
miRNA:   3'- uCCG-----GGCGc--AUGGCGAGaag---GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 26657 0.66 0.631522
Target:  5'- cGGCCU-CGaGCUGCUCUg-CCGCGUc -3'
miRNA:   3'- uCCGGGcGCaUGGCGAGAagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 54574 0.66 0.631522
Target:  5'- cAGGCgCGCGUccgccucacGCCGCUgacguacgcgCUggacCUCGCGCu -3'
miRNA:   3'- -UCCGgGCGCA---------UGGCGA----------GAa---GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136877 0.66 0.631522
Target:  5'- aGGGCCCGCGggagaCGCUggUgCagGCGCg -3'
miRNA:   3'- -UCCGGGCGCaug--GCGAgaAgGg-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 23890 0.66 0.631522
Target:  5'- cGGCCaCGC--GCCGCUCgagccagUCCaccuuGCGCc -3'
miRNA:   3'- uCCGG-GCGcaUGGCGAGa------AGGg----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 65107 0.66 0.638448
Target:  5'- cGGCCCGgGgACCGCgcggacgcgggcuuUCUggcCgCCGUGCg -3'
miRNA:   3'- uCCGGGCgCaUGGCG--------------AGAa--G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 19658 0.66 0.639437
Target:  5'- cGGCgCGCGccGCCGCgcgCgcgggcacggcgUCCuCGCGCg -3'
miRNA:   3'- uCCGgGCGCa-UGGCGa--Ga-----------AGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 106407 0.66 0.631522
Target:  5'- cGGCgCGCGccagcgcgcGCCGCUCaggCCaGCGCg -3'
miRNA:   3'- uCCGgGCGCa--------UGGCGAGaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 74505 0.66 0.641415
Target:  5'- cGGCCaUGCGcacGCCGCUCacggaCCUGgGCa -3'
miRNA:   3'- uCCGG-GCGCa--UGGCGAGaa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 69938 0.66 0.629544
Target:  5'- gAGGUCCGCGc-CCGCggccggggcCCCGcCGCg -3'
miRNA:   3'- -UCCGGGCGCauGGCGagaa-----GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 90038 0.66 0.631522
Target:  5'- cGGCCCGCGccCUGUUugccCUUCCCcCGUc -3'
miRNA:   3'- uCCGGGCGCauGGCGA----GAAGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 102302 0.66 0.641415
Target:  5'- gGGcGCCCGCuggGCUGCggcgCUggggCCGCGCu -3'
miRNA:   3'- -UC-CGGGCGca-UGGCGa---GAag--GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 118032 0.66 0.631522
Target:  5'- gGGGCCUuugGCGgccCCGCUUcgCCUGCuGCc -3'
miRNA:   3'- -UCCGGG---CGCau-GGCGAGaaGGGCG-CG- -5'
23564 3' -61.4 NC_005261.1 + 4845 0.66 0.631522
Target:  5'- uGGGCCgCGCGc-CCGUggg-CCgCGCGCa -3'
miRNA:   3'- -UCCGG-GCGCauGGCGagaaGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 3205 0.66 0.641415
Target:  5'- cGGCCuCGCcgccgcgGCCGCgugCgggCCCGcCGCg -3'
miRNA:   3'- uCCGG-GCGca-----UGGCGa--Gaa-GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 102423 0.66 0.641415
Target:  5'- gGGGCCgGgGUccagGCCGU----CCCGCGCc -3'
miRNA:   3'- -UCCGGgCgCA----UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 11584 0.66 0.641415
Target:  5'- uGGCCgGCGUACaggCGCaUUUUCUggcagagcugCGCGCg -3'
miRNA:   3'- uCCGGgCGCAUG---GCG-AGAAGG----------GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 60318 0.66 0.631522
Target:  5'- cGGCCCGCa-GCUgGCUCaccUCCUGCuGCa -3'
miRNA:   3'- uCCGGGCGcaUGG-CGAGa--AGGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.