Results 1 - 20 of 684 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 3' | -61.4 | NC_005261.1 | + | 40641 | 0.75 | 0.213383 |
Target: 5'- -cGCCCGCuccgcCCGCUCcgCCCGCGCc -3' miRNA: 3'- ucCGGGCGcau--GGCGAGaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 108765 | 0.76 | 0.180308 |
Target: 5'- -aGCgCCGCGUACUGCU--UCCCGCGUc -3' miRNA: 3'- ucCG-GGCGCAUGGCGAgaAGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 118100 | 0.76 | 0.180308 |
Target: 5'- gAGcGCUCGCGgaGCCGCUgCgggCCCGCGCg -3' miRNA: 3'- -UC-CGGGCGCa-UGGCGA-Gaa-GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 79427 | 0.76 | 0.184739 |
Target: 5'- uGGCgcggCGCGUGCCgGC-CUUCCUGCGCg -3' miRNA: 3'- uCCGg---GCGCAUGG-CGaGAAGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 6293 | 0.76 | 0.189265 |
Target: 5'- cGGGCgCGgGcACCGCgg-UCCCGCGCg -3' miRNA: 3'- -UCCGgGCgCaUGGCGagaAGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 33956 | 0.76 | 0.193889 |
Target: 5'- gAGGCCCGCGcagccgccgagACCGCggcgCUCGCGCg -3' miRNA: 3'- -UCCGGGCGCa----------UGGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 104408 | 0.76 | 0.199089 |
Target: 5'- gGGGCCCGCGccccccgGCCGCccaaagacaagcccgCcgCCCGCGCg -3' miRNA: 3'- -UCCGGGCGCa------UGGCGa--------------GaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 20502 | 0.75 | 0.213383 |
Target: 5'- cGGCgCCaGCGcgcgGCCGCUUgcgggCCCGCGCg -3' miRNA: 3'- uCCG-GG-CGCa---UGGCGAGaa---GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 54708 | 0.75 | 0.213383 |
Target: 5'- gGGGCUggagggCGCGUGCCGCUUccaCCgGCGCg -3' miRNA: 3'- -UCCGG------GCGCAUGGCGAGaa-GGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 75919 | 0.76 | 0.175972 |
Target: 5'- gGGGaCCGCGggGCCGCcgCgcgCCCGCGCg -3' miRNA: 3'- -UCCgGGCGCa-UGGCGa-Gaa-GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 122804 | 0.77 | 0.167577 |
Target: 5'- cGGCCCGCGcccgGCCGaCUCUgggcucuacuUUCUGCGCg -3' miRNA: 3'- uCCGGGCGCa---UGGC-GAGA----------AGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 116456 | 0.77 | 0.159543 |
Target: 5'- cGGCCCGCGccgcgGCgGCUCgcCCgGCGCg -3' miRNA: 3'- uCCGGGCGCa----UGgCGAGaaGGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 51006 | 0.79 | 0.115317 |
Target: 5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3' miRNA: 3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 135832 | 0.79 | 0.124379 |
Target: 5'- gGGGCCCGCGgGCgCGCUCgccgCCaGCGCg -3' miRNA: 3'- -UCCGGGCGCaUG-GCGAGaa--GGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 135737 | 0.78 | 0.130782 |
Target: 5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3' miRNA: 3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 134791 | 0.78 | 0.14096 |
Target: 5'- cGGCCCGCGcgcCCGC-CUggacgcuggCCCGCGCg -3' miRNA: 3'- uCCGGGCGCau-GGCGaGAa--------GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 78165 | 0.78 | 0.144511 |
Target: 5'- -aGCCCGCGgaccggccGCCGCUCUUCgCCGcCGCc -3' miRNA: 3'- ucCGGGCGCa-------UGGCGAGAAG-GGC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 110502 | 0.77 | 0.151858 |
Target: 5'- -uGCCCGCGcgucuCCGCUCcUCCCGCGg -3' miRNA: 3'- ucCGGGCGCau---GGCGAGaAGGGCGCg -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 114736 | 0.77 | 0.155657 |
Target: 5'- aGGGCCCGCGccUGCCcagGCggg-CCCGCGCa -3' miRNA: 3'- -UCCGGGCGC--AUGG---CGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 133698 | 0.77 | 0.159543 |
Target: 5'- aGGGCCCgGCGcccucGCCGCggcgCCCGCGCg -3' miRNA: 3'- -UCCGGG-CGCa----UGGCGagaaGGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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