miRNA display CGI


Results 1 - 20 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 317 0.67 0.582201
Target:  5'- cGGGCCCGC---UCGCggggCCCGCGa -3'
miRNA:   3'- -UCCGGGCGcauGGCGagaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 457 0.69 0.505298
Target:  5'- gGGGCCCGgGggcgcgccCCGCacccCgccCCCGCGCg -3'
miRNA:   3'- -UCCGGGCgCau------GGCGa---Gaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 1128 0.69 0.468481
Target:  5'- -cGCCgCGCGgguCCGCUCccacuagcUCCUGCGCc -3'
miRNA:   3'- ucCGG-GCGCau-GGCGAGa-------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 1195 0.66 0.649325
Target:  5'- cGGUCCGCccuccaccgacGCCGUUCUgcuggCCGCGCu -3'
miRNA:   3'- uCCGGGCGca---------UGGCGAGAag---GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 1623 0.69 0.47756
Target:  5'- cGGCgCGCGcgcGCCGCUCcaCgCUGCGCc -3'
miRNA:   3'- uCCGgGCGCa--UGGCGAGaaG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 1743 0.71 0.399304
Target:  5'- cGGCgCCGa--GCUGCUCgcugcugCCCGCGCg -3'
miRNA:   3'- uCCG-GGCgcaUGGCGAGaa-----GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 1781 0.7 0.441793
Target:  5'- gGGGCugCCGCGUGCCccuGCgacgCCCGCGa -3'
miRNA:   3'- -UCCG--GGCGCAUGG---CGagaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 1890 0.66 0.631522
Target:  5'- cGGCgCGCGccagcgcgcGCCGCUCaggCCaGCGCg -3'
miRNA:   3'- uCCGgGCGCa--------UGGCGAGaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 2094 0.67 0.570459
Target:  5'- cAGGuCCCGCGUcgcgagcagcagcacGCCcugcgcgccgagcgcGCUCacgUCCgGCGCg -3'
miRNA:   3'- -UCC-GGGCGCA---------------UGG---------------CGAGa--AGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 2399 0.66 0.680845
Target:  5'- cGGCgaGCGcgcCCGCgggcCCCGCGCg -3'
miRNA:   3'- uCCGggCGCau-GGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 2503 0.67 0.62163
Target:  5'- uGGUCCGCGaGCCGCg----CCGCGa -3'
miRNA:   3'- uCCGGGCGCaUGGCGagaagGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 2579 0.68 0.552958
Target:  5'- gAGGgCCGC---CCGCg---CCCGCGCa -3'
miRNA:   3'- -UCCgGGCGcauGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 2741 0.67 0.616686
Target:  5'- gAGGCCagCGCGUccaucagguucucGCCGCgcaguacgaggUCCCGCaGCg -3'
miRNA:   3'- -UCCGG--GCGCA-------------UGGCGaga--------AGGGCG-CG- -5'
23564 3' -61.4 NC_005261.1 + 3205 0.66 0.641415
Target:  5'- cGGCCuCGCcgccgcgGCCGCgugCgggCCCGcCGCg -3'
miRNA:   3'- uCCGG-GCGca-----UGGCGa--Gaa-GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 3316 0.67 0.582201
Target:  5'- cGGCCCGCaUGuCCuccacCUCcaCCCGCGCc -3'
miRNA:   3'- uCCGGGCGcAU-GGc----GAGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 3364 0.66 0.661174
Target:  5'- gGGGCCCGCGggGgCGCgggCgccuugUCCC-CGUc -3'
miRNA:   3'- -UCCGGGCGCa-UgGCGa--Ga-----AGGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 3448 0.72 0.337014
Target:  5'- cGGGCgCGCGgGCCGC-CgcgCCGCGCg -3'
miRNA:   3'- -UCCGgGCGCaUGGCGaGaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 3676 0.68 0.552958
Target:  5'- cGGCCgGCagGCCGCgg--CCCGCuGCa -3'
miRNA:   3'- uCCGGgCGcaUGGCGagaaGGGCG-CG- -5'
23564 3' -61.4 NC_005261.1 + 3804 0.67 0.57926
Target:  5'- -aGCUCGCGcaGCCGCUCgcgcgcugccgcgggCCCGgGCg -3'
miRNA:   3'- ucCGGGCGCa-UGGCGAGaa-------------GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 4180 0.68 0.52417
Target:  5'- cGGGCCCGCGaGCuucgCGCUCUgcagccaggCCauggcgucgcggCGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG----GCGAGAa--------GG------------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.