miRNA display CGI


Results 21 - 40 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 4247 0.74 0.251537
Target:  5'- -aGCgCCGCGUACUGCUUc-CCCGCGUc -3'
miRNA:   3'- ucCG-GGCGCAUGGCGAGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 4299 0.67 0.582201
Target:  5'- cGGGcCCCGCGgccGCCGCg--UagCGCGCg -3'
miRNA:   3'- -UCC-GGGCGCa--UGGCGagaAggGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 4334 0.69 0.459491
Target:  5'- cAGGCCagcaGCGcGCCGCggg-CuuGCGCa -3'
miRNA:   3'- -UCCGGg---CGCaUGGCGagaaGggCGCG- -5'
23564 3' -61.4 NC_005261.1 + 4471 0.7 0.424487
Target:  5'- cGGCCCGuCGcgcggcGCCGCggCguagCCUGCGCg -3'
miRNA:   3'- uCCGGGC-GCa-----UGGCGa-Gaa--GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 4845 0.66 0.631522
Target:  5'- uGGGCCgCGCGc-CCGUggg-CCgCGCGCa -3'
miRNA:   3'- -UCCGG-GCGCauGGCGagaaGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 4917 0.69 0.468481
Target:  5'- cGGCugccuccgCCGCG-GCCGCgagcgCCCGCGCc -3'
miRNA:   3'- uCCG--------GGCGCaUGGCGagaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 5506 0.67 0.615697
Target:  5'- uGGGgCCGCGgcagcggcggcgagGCCGCcggCUUCggCGCGCa -3'
miRNA:   3'- -UCCgGGCGCa-------------UGGCGa--GAAGg-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 5985 0.75 0.229089
Target:  5'- -uGCCgCGCGUcuCCGCUCcUCCCGCGg -3'
miRNA:   3'- ucCGG-GCGCAu-GGCGAGaAGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 6112 0.66 0.671024
Target:  5'- -aGCCgCGCGUcCCGCUCcaCgaGCGCg -3'
miRNA:   3'- ucCGG-GCGCAuGGCGAGaaGggCGCG- -5'
23564 3' -61.4 NC_005261.1 + 6249 0.66 0.651302
Target:  5'- aGGGCCUGCccgccCCGCggggCggCCCGcCGCc -3'
miRNA:   3'- -UCCGGGCGcau--GGCGa---GaaGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 6293 0.76 0.189265
Target:  5'- cGGGCgCGgGcACCGCgg-UCCCGCGCg -3'
miRNA:   3'- -UCCGgGCgCaUGGCGagaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 6485 0.71 0.399304
Target:  5'- cGGCCgGCGUGCCGU-----CCGCGUg -3'
miRNA:   3'- uCCGGgCGCAUGGCGagaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 6624 0.68 0.552958
Target:  5'- cAGGCgCGCGUACgUGCgcg-CgCGCGCg -3'
miRNA:   3'- -UCCGgGCGCAUG-GCGagaaGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 7763 0.66 0.671024
Target:  5'- gAGGCacgCCGCGaGCCGCUCgggCCaGuCGUa -3'
miRNA:   3'- -UCCG---GGCGCaUGGCGAGaa-GGgC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 7880 0.7 0.441793
Target:  5'- aGGGCa-GCGaGCgGCUCUguUCCgGCGCg -3'
miRNA:   3'- -UCCGggCGCaUGgCGAGA--AGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 8618 0.69 0.468481
Target:  5'- aAGGCgcccgaccccgCCGCGaaauUGCCGCgugUCCCGCGg -3'
miRNA:   3'- -UCCG-----------GGCGC----AUGGCGagaAGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 8859 0.68 0.52417
Target:  5'- uGGaCCCGaa-GCCGCgCgaCCCGCGCg -3'
miRNA:   3'- uCC-GGGCgcaUGGCGaGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 9055 0.68 0.552958
Target:  5'- uGGCCUGCGgcaGCaacgaGCggUUCCUGCGUg -3'
miRNA:   3'- uCCGGGCGCa--UGg----CGagAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 9888 0.66 0.641415
Target:  5'- -cGCgCGCGgggUGCCGCUCUcggagCCCcCGCa -3'
miRNA:   3'- ucCGgGCGC---AUGGCGAGAa----GGGcGCG- -5'
23564 3' -61.4 NC_005261.1 + 10082 0.71 0.38627
Target:  5'- aAGGCCCGCGgccccggcgACCGUcgccucucuccgcacUCggcccgacCCCGCGCc -3'
miRNA:   3'- -UCCGGGCGCa--------UGGCG---------------AGaa------GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.