miRNA display CGI


Results 21 - 40 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 134317 0.7 0.415987
Target:  5'- gAGGCCgGCGccgGCgGCgcgggcgCCCGCGCc -3'
miRNA:   3'- -UCCGGgCGCa--UGgCGagaa---GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 134296 0.75 0.213383
Target:  5'- uGGGUCCaCGUcGCCGC-CUUCgCCGCGCu -3'
miRNA:   3'- -UCCGGGcGCA-UGGCGaGAAG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 134222 0.67 0.592023
Target:  5'- cGGCCUGCGUggccaugagccGCCGCUacgaCUGCGa -3'
miRNA:   3'- uCCGGGCGCA-----------UGGCGAgaagGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 133947 0.7 0.450595
Target:  5'- gGGGCCCGCG-GCCGUg---UUCGUGCc -3'
miRNA:   3'- -UCCGGGCGCaUGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133825 0.68 0.552958
Target:  5'- gAGGCgcugcgcggCCGCGUGCgCGC-CguggCCgGCGCg -3'
miRNA:   3'- -UCCG---------GGCGCAUG-GCGaGaa--GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133741 0.75 0.229089
Target:  5'- gGGGCCCGCGcaggcuacGCCGCgg--CgCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGagaaG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133698 0.77 0.159543
Target:  5'- aGGGCCCgGCGcccucGCCGCggcgCCCGCGCg -3'
miRNA:   3'- -UCCGGG-CGCa----UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133623 0.67 0.62163
Target:  5'- uGGCgCUGUGgGCCGCgc-UCgCCGCGCc -3'
miRNA:   3'- uCCG-GGCGCaUGGCGagaAG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133391 0.66 0.651302
Target:  5'- gAGGCUgcggCGCGgacGCCGCcg--CCUGCGCc -3'
miRNA:   3'- -UCCGG----GCGCa--UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133097 0.68 0.514699
Target:  5'- gAGGCgCGCGagcGCCgGCgggCcgCCCGCGCc -3'
miRNA:   3'- -UCCGgGCGCa--UGG-CGa--GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 132805 0.66 0.651302
Target:  5'- gAGGCCa-UGaGCCGCUa--CCUGCGCg -3'
miRNA:   3'- -UCCGGgcGCaUGGCGAgaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 132721 0.66 0.680845
Target:  5'- cGGCCuCGCcgccGUGCCGCggccccagCUaCCCcccgGCGCg -3'
miRNA:   3'- uCCGG-GCG----CAUGGCGa-------GAaGGG----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 132690 0.7 0.424487
Target:  5'- uGGGCuuCCGCGUgGCCGUgcccgUCCCgGCGCc -3'
miRNA:   3'- -UCCG--GGCGCA-UGGCGaga--AGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 132419 0.67 0.582201
Target:  5'- uGGCCCGCGcACCcCUgCUUCUUuuacaagaGCGCg -3'
miRNA:   3'- uCCGGGCGCaUGGcGA-GAAGGG--------CGCG- -5'
23564 3' -61.4 NC_005261.1 + 132189 0.7 0.410937
Target:  5'- gGGGCCCGC--AUUGCUUggguccgggcccgCCCGCGCc -3'
miRNA:   3'- -UCCGGGCGcaUGGCGAGaa-----------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 131929 0.73 0.269539
Target:  5'- uGGCgCGCGcgggACCGCggugCCCGCGCc -3'
miRNA:   3'- uCCGgGCGCa---UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 131787 0.68 0.562662
Target:  5'- uGGGCCC-CGacGCCGCg---CCCGcCGCg -3'
miRNA:   3'- -UCCGGGcGCa-UGGCGagaaGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 131192 0.71 0.391124
Target:  5'- -cGCCCGCGgcgcggucGCCGCcggCgcgCCCGCGUa -3'
miRNA:   3'- ucCGGGCGCa-------UGGCGa--Gaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 130640 0.72 0.325437
Target:  5'- gGGGCgCGCGUgcgcucgccgacgcGCUGCUCcucggcgagccccugCCCGCGCg -3'
miRNA:   3'- -UCCGgGCGCA--------------UGGCGAGaa-------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 130566 0.7 0.442669
Target:  5'- cGGCCCGCcgggcggaagcgccGCCGCgCggcCCCGCGCc -3'
miRNA:   3'- uCCGGGCGca------------UGGCGaGaa-GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.