miRNA display CGI


Results 41 - 60 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 130450 0.68 0.543305
Target:  5'- uGGCCCuGCc--CCGC-CUUCCCGUacGCa -3'
miRNA:   3'- uCCGGG-CGcauGGCGaGAAGGGCG--CG- -5'
23564 3' -61.4 NC_005261.1 + 130242 0.76 0.178562
Target:  5'- cAGGCgCCGCGccaGCgGCUCguacugcggggcgUCCCGCGCg -3'
miRNA:   3'- -UCCG-GGCGCa--UGgCGAGa------------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 129783 0.67 0.611745
Target:  5'- cGGCCCgGCcuucGCCuucgccuccgcGCUCgcgCCCGCGCc -3'
miRNA:   3'- uCCGGG-CGca--UGG-----------CGAGaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 129326 0.72 0.315552
Target:  5'- uGGCgCCGCGUcgccgaccucGCCGCgguagcgccccCUUCCgCGCGCg -3'
miRNA:   3'- uCCG-GGCGCA----------UGGCGa----------GAAGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 128803 0.74 0.240094
Target:  5'- cGGGCCCGCGgcgggGCuCGCgcugcggCUgacgCUCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa----UG-GCGa------GAa---GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 128328 0.7 0.433089
Target:  5'- aGGGCCUGCGggggcuCCGagagCggcacCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCau----GGCga--Gaa---GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 128211 0.67 0.617674
Target:  5'- -cGCCCcCGcACCGCUUUcuuauugggcccgCCCGCGCu -3'
miRNA:   3'- ucCGGGcGCaUGGCGAGAa------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 127986 0.67 0.611745
Target:  5'- cAGGCCCGCG-GCgGCgagugcgCgggCCCGCcuggGCa -3'
miRNA:   3'- -UCCGGGCGCaUGgCGa------Gaa-GGGCG----CG- -5'
23564 3' -61.4 NC_005261.1 + 127902 0.66 0.671024
Target:  5'- cGGGCCCGgGccuggGCUuggGCUCgggCCCGCu- -3'
miRNA:   3'- -UCCGGGCgCa----UGG---CGAGaa-GGGCGcg -5'
23564 3' -61.4 NC_005261.1 + 127804 0.75 0.229089
Target:  5'- cGGCgCCGCGgcggcggGCCGCUCgcgCUCGCGg -3'
miRNA:   3'- uCCG-GGCGCa------UGGCGAGaa-GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 127724 0.67 0.592023
Target:  5'- gGGGCCCGCagcggcgGCCGC-CgcaaaagCCgGUGCa -3'
miRNA:   3'- -UCCGGGCGca-----UGGCGaGaa-----GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 127330 0.67 0.582201
Target:  5'- -cGCCCGCGgggGCCggagcggcgggGCgCUgggCCCGCGUg -3'
miRNA:   3'- ucCGGGCGCa--UGG-----------CGaGAa--GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 127275 0.69 0.495972
Target:  5'- cGGGCCCGCccGCCGCgggggcagccCUcCCCGCcgGCu -3'
miRNA:   3'- -UCCGGGCGcaUGGCGa---------GAaGGGCG--CG- -5'
23564 3' -61.4 NC_005261.1 + 126718 0.66 0.659201
Target:  5'- uGGUUCGCGUGCgCGUUCaaguccaagcgUCCGCGUc -3'
miRNA:   3'- uCCGGGCGCAUG-GCGAGaa---------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 126606 1.11 0.000629
Target:  5'- cAGGCCCGCGUACCGCUCUUCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCAUGGCGAGAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 126524 0.71 0.375097
Target:  5'- gGGcGCCCGCGcccGCCGCgccUCggCCaCGCGCc -3'
miRNA:   3'- -UC-CGGGCGCa--UGGCG---AGaaGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 126346 0.71 0.399304
Target:  5'- cGGGCgCGCGUGCgggcggGCUCgcCCCGCaGCu -3'
miRNA:   3'- -UCCGgGCGCAUGg-----CGAGaaGGGCG-CG- -5'
23564 3' -61.4 NC_005261.1 + 126088 0.67 0.576323
Target:  5'- gGGGCCUGCGcgGCCGCcgCggcggcgggcgccaUCCUgGCGCu -3'
miRNA:   3'- -UCCGGGCGCa-UGGCGa-Ga-------------AGGG-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 126080 0.66 0.671024
Target:  5'- cGGCCUcgGCGgGCgCGCccaUCUUCgCGCGUa -3'
miRNA:   3'- uCCGGG--CGCaUG-GCG---AGAAGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 126036 0.73 0.295138
Target:  5'- cGGCCgCGCGUACgagUGCUCccgcUCCgGCGCc -3'
miRNA:   3'- uCCGG-GCGCAUG---GCGAGa---AGGgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.