miRNA display CGI


Results 41 - 60 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 54708 0.75 0.213383
Target:  5'- gGGGCUggagggCGCGUGCCGCUUccaCCgGCGCg -3'
miRNA:   3'- -UCCGG------GCGCAUGGCGAGaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 40641 0.75 0.213383
Target:  5'- -cGCCCGCuccgcCCGCUCcgCCCGCGCc -3'
miRNA:   3'- ucCGGGCGcau--GGCGAGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 76016 0.75 0.218513
Target:  5'- uGGCgCCGCGcagcGCCGCgggCgcCCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCa---UGGCGa--GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 63524 0.75 0.218513
Target:  5'- cGGCCCG-GUuCCGCg---CCCGCGCg -3'
miRNA:   3'- uCCGGGCgCAuGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 37540 0.75 0.223748
Target:  5'- gAGGUCCGCGcGCCGC---UCCCGcCGCc -3'
miRNA:   3'- -UCCGGGCGCaUGGCGagaAGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 127804 0.75 0.229089
Target:  5'- cGGCgCCGCGgcggcggGCCGCUCgcgCUCGCGg -3'
miRNA:   3'- uCCG-GGCGCa------UGGCGAGaa-GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 29224 0.75 0.229089
Target:  5'- gGGGCCCGCGcaggcuacGCCGCgg--CgCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGagaaG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 15979 0.75 0.229089
Target:  5'- aGGGCCCGg--GCCGCUCa-CCCGgGCa -3'
miRNA:   3'- -UCCGGGCgcaUGGCGAGaaGGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 5985 0.75 0.229089
Target:  5'- -uGCCgCGCGUcuCCGCUCcUCCCGCGg -3'
miRNA:   3'- ucCGG-GCGCAu-GGCGAGaAGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 133741 0.75 0.229089
Target:  5'- gGGGCCCGCGcaggcuacGCCGCgg--CgCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGagaaG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 70055 0.75 0.229089
Target:  5'- gGGGCCCGCGgcGCgCGCgagC-UCCgCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa-UG-GCGa--GaAGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 10888 0.74 0.234537
Target:  5'- cGGGCCCaGCGccccGCCGCUCcggccCCCGCGg -3'
miRNA:   3'- -UCCGGG-CGCa---UGGCGAGaa---GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 95568 0.74 0.234537
Target:  5'- cGGCCCGgccGCCGCUUggcuggUUCCGCGCg -3'
miRNA:   3'- uCCGGGCgcaUGGCGAGa-----AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 101044 0.74 0.234537
Target:  5'- -aGCCgCGCGUAgUGCUCgUCCgCGCGCa -3'
miRNA:   3'- ucCGG-GCGCAUgGCGAGaAGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 95487 0.74 0.240094
Target:  5'- aAGGCCCGCG-GCgGCaUCgaCCCGCGg -3'
miRNA:   3'- -UCCGGGCGCaUGgCG-AGaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 118036 0.74 0.240094
Target:  5'- gGGGCCCG---GCCGCgacgCCCGCGCu -3'
miRNA:   3'- -UCCGGGCgcaUGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 70093 0.74 0.240094
Target:  5'- cGGCCacggCGCGgucGCCGCgccgCggCCCGCGCa -3'
miRNA:   3'- uCCGG----GCGCa--UGGCGa---GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 128803 0.74 0.240094
Target:  5'- cGGGCCCGCGgcgggGCuCGCgcugcggCUgacgCUCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa----UG-GCGa------GAa---GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 34802 0.74 0.24576
Target:  5'- gAGGCgCGCGcgcgcgugGCCGCgg--CCCGCGCg -3'
miRNA:   3'- -UCCGgGCGCa-------UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 71092 0.74 0.24576
Target:  5'- cGGGCCCgagaagGCGUACacggcgcgcaGCUUgcgCCCGCGCg -3'
miRNA:   3'- -UCCGGG------CGCAUGg---------CGAGaa-GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.