miRNA display CGI


Results 61 - 80 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 34802 0.74 0.24576
Target:  5'- gAGGCgCGCGcgcgcgugGCCGCgg--CCCGCGCg -3'
miRNA:   3'- -UCCGgGCGCa-------UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 29513 0.74 0.24576
Target:  5'- uGGCCCGCG---CGCUCUUCgCCGUGg -3'
miRNA:   3'- uCCGGGCGCaugGCGAGAAG-GGCGCg -5'
23564 3' -61.4 NC_005261.1 + 71603 0.74 0.24576
Target:  5'- uAGGCCCGCc-GCCGCgg--CCCGgGCg -3'
miRNA:   3'- -UCCGGGCGcaUGGCGagaaGGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 102521 0.74 0.24576
Target:  5'- cAGGUCCGCGUGCaGCUUggccgCCUGCGg -3'
miRNA:   3'- -UCCGGGCGCAUGgCGAGaa---GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 71436 0.74 0.24576
Target:  5'- cGGGCCCGCGgcgcgcaGCCGCcgCcUCCCGgaGCa -3'
miRNA:   3'- -UCCGGGCGCa------UGGCGa-GaAGGGCg-CG- -5'
23564 3' -61.4 NC_005261.1 + 71092 0.74 0.24576
Target:  5'- cGGGCCCgagaagGCGUACacggcgcgcaGCUUgcgCCCGCGCg -3'
miRNA:   3'- -UCCGGG------CGCAUGg---------CGAGaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 34596 0.74 0.250954
Target:  5'- uGGCCCGCuUcgaggcgauggccGCCGCcgCcUCCCGCGCu -3'
miRNA:   3'- uCCGGGCGcA-------------UGGCGa-GaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 4247 0.74 0.251537
Target:  5'- -aGCgCCGCGUACUGCUUc-CCCGCGUc -3'
miRNA:   3'- ucCG-GGCGCAUGGCGAGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 104442 0.74 0.251537
Target:  5'- cGGGCCCGCGUcGCCGCcg--CCgGCGg -3'
miRNA:   3'- -UCCGGGCGCA-UGGCGagaaGGgCGCg -5'
23564 3' -61.4 NC_005261.1 + 88769 0.74 0.251537
Target:  5'- cGGCCUGCGcgcCCGC-CUUCCgcggCGCGCg -3'
miRNA:   3'- uCCGGGCGCau-GGCGaGAAGG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 123995 0.74 0.251537
Target:  5'- aAGGCCC-CGgccgGCgCGgUCUUCaCCGCGCg -3'
miRNA:   3'- -UCCGGGcGCa---UG-GCgAGAAG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 84661 0.74 0.251537
Target:  5'- cGGCCCGCG-GCCGCUagugcgCCUGgGCc -3'
miRNA:   3'- uCCGGGCGCaUGGCGAgaa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 95199 0.74 0.257425
Target:  5'- uGGGaCCCGC--GCCGC-CcgCCCGCGCg -3'
miRNA:   3'- -UCC-GGGCGcaUGGCGaGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 43277 0.74 0.257425
Target:  5'- gGGGCgUCGCG-GCCGCcUUUCCCGCGg -3'
miRNA:   3'- -UCCG-GGCGCaUGGCGaGAAGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 82811 0.74 0.257425
Target:  5'- cGGCCaccugcaGCcgGUGCCGCgc-UCCCGCGCg -3'
miRNA:   3'- uCCGGg------CG--CAUGGCGagaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 121365 0.74 0.263426
Target:  5'- cAGGUUCGCGUACUGCaggCgcCCCGCGg -3'
miRNA:   3'- -UCCGGGCGCAUGGCGa--GaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 14993 0.73 0.26708
Target:  5'- gGGGCCCGCGccugggcgGCCGCUaggcggcaggCCGCGCu -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGAgaag------GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 131929 0.73 0.269539
Target:  5'- uGGCgCGCGcgggACCGCggugCCCGCGCc -3'
miRNA:   3'- uCCGgGCGCa---UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 82074 0.73 0.269539
Target:  5'- cGGGcCCCGcCGcUGCCGCcacccUCggCCCGCGCc -3'
miRNA:   3'- -UCC-GGGC-GC-AUGGCG-----AGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 125496 0.73 0.269539
Target:  5'- cGGGCCCGCccaggggGCCgGCggg-CCCGCGCg -3'
miRNA:   3'- -UCCGGGCGca-----UGG-CGagaaGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.