miRNA display CGI


Results 61 - 80 of 684 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 54708 0.75 0.213383
Target:  5'- gGGGCUggagggCGCGUGCCGCUUccaCCgGCGCg -3'
miRNA:   3'- -UCCGG------GCGCAUGGCGAGaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 40641 0.75 0.213383
Target:  5'- -cGCCCGCuccgcCCGCUCcgCCCGCGCc -3'
miRNA:   3'- ucCGGGCGcau--GGCGAGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 88769 0.74 0.251537
Target:  5'- cGGCCUGCGcgcCCGC-CUUCCgcggCGCGCg -3'
miRNA:   3'- uCCGGGCGCau-GGCGaGAAGG----GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 123995 0.74 0.251537
Target:  5'- aAGGCCC-CGgccgGCgCGgUCUUCaCCGCGCg -3'
miRNA:   3'- -UCCGGGcGCa---UG-GCgAGAAG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 14993 0.73 0.26708
Target:  5'- gGGGCCCGCGccugggcgGCCGCUaggcggcaggCCGCGCu -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGAgaag------GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 69655 0.73 0.269539
Target:  5'- cGGCCCGCcucggcggcgACgCGCUCaaagagCCCGCGCa -3'
miRNA:   3'- uCCGGGCGca--------UG-GCGAGaa----GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 82074 0.73 0.269539
Target:  5'- cGGGcCCCGcCGcUGCCGCcacccUCggCCCGCGCc -3'
miRNA:   3'- -UCC-GGGC-GC-AUGGCG-----AGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 125496 0.73 0.269539
Target:  5'- cGGGCCCGCccaggggGCCgGCggg-CCCGCGCg -3'
miRNA:   3'- -UCCGGGCGca-----UGG-CGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 38768 0.73 0.275767
Target:  5'- cGGCCaGCGccGCCGCgggUCggCCCGCGCu -3'
miRNA:   3'- uCCGGgCGCa-UGGCG---AGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135647 0.73 0.280194
Target:  5'- cGGCuuccgCCGCGUGCCGCcCggggaguaccacacgCCCGCGCc -3'
miRNA:   3'- uCCG-----GGCGCAUGGCGaGaa-------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 84661 0.74 0.251537
Target:  5'- cGGCCCGCG-GCCGCUagugcgCCUGgGCc -3'
miRNA:   3'- uCCGGGCGCaUGGCGAgaa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 34596 0.74 0.250954
Target:  5'- uGGCCCGCuUcgaggcgauggccGCCGCcgCcUCCCGCGCu -3'
miRNA:   3'- uCCGGGCGcA-------------UGGCGa-GaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 63524 0.75 0.218513
Target:  5'- cGGCCCG-GUuCCGCg---CCCGCGCg -3'
miRNA:   3'- uCCGGGCgCAuGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 70055 0.75 0.229089
Target:  5'- gGGGCCCGCGgcGCgCGCgagC-UCCgCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa-UG-GCGa--GaAGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 133741 0.75 0.229089
Target:  5'- gGGGCCCGCGcaggcuacGCCGCgg--CgCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa-------UGGCGagaaG-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 10888 0.74 0.234537
Target:  5'- cGGGCCCaGCGccccGCCGCUCcggccCCCGCGg -3'
miRNA:   3'- -UCCGGG-CGCa---UGGCGAGaa---GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 95568 0.74 0.234537
Target:  5'- cGGCCCGgccGCCGCUUggcuggUUCCGCGCg -3'
miRNA:   3'- uCCGGGCgcaUGGCGAGa-----AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 70093 0.74 0.240094
Target:  5'- cGGCCacggCGCGgucGCCGCgccgCggCCCGCGCa -3'
miRNA:   3'- uCCGG----GCGCa--UGGCGa---GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 29513 0.74 0.24576
Target:  5'- uGGCCCGCG---CGCUCUUCgCCGUGg -3'
miRNA:   3'- uCCGGGCGCaugGCGAGAAG-GGCGCg -5'
23564 3' -61.4 NC_005261.1 + 34802 0.74 0.24576
Target:  5'- gAGGCgCGCGcgcgcgugGCCGCgg--CCCGCGCg -3'
miRNA:   3'- -UCCGgGCGCa-------UGGCGagaaGGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.