miRNA display CGI


Results 61 - 80 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 66333 0.66 0.671024
Target:  5'- uGGCCgGCGg--CGCggagcacuuuuUCgugCCCGCGCg -3'
miRNA:   3'- uCCGGgCGCaugGCG-----------AGaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 63622 0.66 0.661174
Target:  5'- aAGGCCgGCGcgaugaaguuCCGCUCgUCCgGCa- -3'
miRNA:   3'- -UCCGGgCGCau--------GGCGAGaAGGgCGcg -5'
23564 3' -61.4 NC_005261.1 + 83858 0.66 0.651302
Target:  5'- cGGGCgCCcCGaGCCGCUg--CCCGCGg -3'
miRNA:   3'- -UCCG-GGcGCaUGGCGAgaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 19658 0.66 0.639437
Target:  5'- cGGCgCGCGccGCCGCgcgCgcgggcacggcgUCCuCGCGCg -3'
miRNA:   3'- uCCGgGCGCa-UGGCGa--Ga-----------AGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 6112 0.66 0.671024
Target:  5'- -aGCCgCGCGUcCCGCUCcaCgaGCGCg -3'
miRNA:   3'- ucCGG-GCGCAuGGCGAGaaGggCGCG- -5'
23564 3' -61.4 NC_005261.1 + 63049 0.66 0.671024
Target:  5'- aAGGUCCGCG-ACaUGCg---CCCGuCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGagaaGGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 80729 0.66 0.661174
Target:  5'- aAGGCCCGCc-GCCGggaCgugCCCGuCGCg -3'
miRNA:   3'- -UCCGGGCGcaUGGCga-Gaa-GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 73729 0.66 0.641415
Target:  5'- -cGCCCGCGgGCCcCgagcaCCCGCGCc -3'
miRNA:   3'- ucCGGGCGCaUGGcGagaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 69221 0.66 0.680845
Target:  5'- cGGaCUCGCcaacgaaGCCGCggcgCCCGCGCg -3'
miRNA:   3'- uCC-GGGCGca-----UGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 31298 0.66 0.680845
Target:  5'- gAGGUgCGCGUGUCGCUggCggCCCugcaGCGCg -3'
miRNA:   3'- -UCCGgGCGCAUGGCGA--GaaGGG----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 77942 0.66 0.641415
Target:  5'- -uGCCUGCGgGCCGCgggggCggacCCCGgGCg -3'
miRNA:   3'- ucCGGGCGCaUGGCGa----Gaa--GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 23890 0.66 0.631522
Target:  5'- cGGCCaCGC--GCCGCUCgagccagUCCaccuuGCGCc -3'
miRNA:   3'- uCCGG-GCGcaUGGCGAGa------AGGg----CGCG- -5'
23564 3' -61.4 NC_005261.1 + 65107 0.66 0.638448
Target:  5'- cGGCCCGgGgACCGCgcggacgcgggcuuUCUggcCgCCGUGCg -3'
miRNA:   3'- uCCGGGCgCaUGGCG--------------AGAa--G-GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 62634 0.66 0.661174
Target:  5'- -cGUCCGCGU-CCGCgg--CgCGCGCg -3'
miRNA:   3'- ucCGGGCGCAuGGCGagaaGgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 120598 0.66 0.630533
Target:  5'- cGGCCuCGCGaucgcuuugcuagUGCUGCUgUUCUCGCu- -3'
miRNA:   3'- uCCGG-GCGC-------------AUGGCGAgAAGGGCGcg -5'
23564 3' -61.4 NC_005261.1 + 74505 0.66 0.641415
Target:  5'- cGGCCaUGCGcacGCCGCUCacggaCCUGgGCa -3'
miRNA:   3'- uCCGG-GCGCa--UGGCGAGaa---GGGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 19035 0.66 0.650314
Target:  5'- cGGGCgCGCGguagACUcucgguccggcggGCUCUcggcgaaaaacUCUCGCGCg -3'
miRNA:   3'- -UCCGgGCGCa---UGG-------------CGAGA-----------AGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 4845 0.66 0.631522
Target:  5'- uGGGCCgCGCGc-CCGUggg-CCgCGCGCa -3'
miRNA:   3'- -UCCGG-GCGCauGGCGagaaGG-GCGCG- -5'
23564 3' -61.4 NC_005261.1 + 3205 0.66 0.641415
Target:  5'- cGGCCuCGCcgccgcgGCCGCgugCgggCCCGcCGCg -3'
miRNA:   3'- uCCGG-GCGca-----UGGCGa--Gaa-GGGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 66239 0.66 0.671024
Target:  5'- aAGGCCagggGCGacgcugcgcaccUGCCGCgcgCUccgcgcCCCGCGCc -3'
miRNA:   3'- -UCCGGg---CGC------------AUGGCGa--GAa-----GGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.