miRNA display CGI


Results 1 - 20 of 684 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 138140 0.69 0.505298
Target:  5'- gGGGCCCGgGggcgcgccCCGCacccCgccCCCGCGCg -3'
miRNA:   3'- -UCCGGGCgCau------GGCGa---Gaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 138000 0.67 0.582201
Target:  5'- cGGGCCCGC---UCGCggggCCCGCGa -3'
miRNA:   3'- -UCCGGGCGcauGGCGagaaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 137050 0.67 0.582201
Target:  5'- cGGCCC-CGgccccgGCCGCggcgCgggCCgGCGCg -3'
miRNA:   3'- uCCGGGcGCa-----UGGCGa---Gaa-GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136877 0.66 0.631522
Target:  5'- aGGGCCCGCGggagaCGCUggUgCagGCGCg -3'
miRNA:   3'- -UCCGGGCGCaug--GCGAgaAgGg-CGCG- -5'
23564 3' -61.4 NC_005261.1 + 136666 0.67 0.62163
Target:  5'- gGGGCUCgGCGcGCCGCUgCggCCgGUGUa -3'
miRNA:   3'- -UCCGGG-CGCaUGGCGA-GaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136500 0.83 0.067283
Target:  5'- uGGGCCCGCGcACCGCggugCCCGUGCc -3'
miRNA:   3'- -UCCGGGCGCaUGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136439 0.67 0.601874
Target:  5'- gGGGCgCCGCcgcUGCgGCUCUg-CCGCGg -3'
miRNA:   3'- -UCCG-GGCGc--AUGgCGAGAagGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 136277 0.66 0.661174
Target:  5'- cAGGCgcacguguacCUGCGcGCCGCggugCUgCCCGCGg -3'
miRNA:   3'- -UCCG----------GGCGCaUGGCGa---GAaGGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 135832 0.79 0.124379
Target:  5'- gGGGCCCGCGgGCgCGCUCgccgCCaGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGAGaa--GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135737 0.78 0.130782
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
23564 3' -61.4 NC_005261.1 + 135647 0.73 0.280194
Target:  5'- cGGCuuccgCCGCGUGCCGCcCggggaguaccacacgCCCGCGCc -3'
miRNA:   3'- uCCG-----GGCGCAUGGCGaGaa-------------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135566 0.67 0.582201
Target:  5'- cGGGUCCccagcgcgGCGggaGCCGCcgCUgcccgCCCGCGUg -3'
miRNA:   3'- -UCCGGG--------CGCa--UGGCGa-GAa----GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135278 0.67 0.572412
Target:  5'- cGGCCUGUGcagaACgGCgggUUCCGCGCg -3'
miRNA:   3'- uCCGGGCGCa---UGgCGagaAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135228 0.68 0.543305
Target:  5'- cGGCCgagCGCGUcGCCGCcgUCUUUgCGgGCg -3'
miRNA:   3'- uCCGG---GCGCA-UGGCG--AGAAGgGCgCG- -5'
23564 3' -61.4 NC_005261.1 + 135017 0.66 0.680845
Target:  5'- cGGGCCCGCacgcgGCCGCggcggCgaggccgacgCCUGCGg -3'
miRNA:   3'- -UCCGGGCGca---UGGCGa----Gaa--------GGGCGCg -5'
23564 3' -61.4 NC_005261.1 + 134791 0.78 0.14096
Target:  5'- cGGCCCGCGcgcCCGC-CUggacgcuggCCCGCGCg -3'
miRNA:   3'- uCCGGGCGCau-GGCGaGAa--------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 134648 0.66 0.641415
Target:  5'- cGGCCCGCGa--CGCgguggagCgCGCGCg -3'
miRNA:   3'- uCCGGGCGCaugGCGagaa---GgGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 134565 0.72 0.308631
Target:  5'- cGGCCUGCcgGCCGCgg--CCUGCGCu -3'
miRNA:   3'- uCCGGGCGcaUGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 134415 0.7 0.441793
Target:  5'- cGGGCCCGCGgcaGCgCGCgagCgg-CUGCGCg -3'
miRNA:   3'- -UCCGGGCGCa--UG-GCGa--GaagGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 134330 0.67 0.611745
Target:  5'- uGGUCuCGCugcuGUACCGCaagccCCCGCGCc -3'
miRNA:   3'- uCCGG-GCG----CAUGGCGagaa-GGGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.