Results 1 - 20 of 684 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 3' | -61.4 | NC_005261.1 | + | 126606 | 1.11 | 0.000629 |
Target: 5'- cAGGCCCGCGUACCGCUCUUCCCGCGCg -3' miRNA: 3'- -UCCGGGCGCAUGGCGAGAAGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 136500 | 0.83 | 0.067283 |
Target: 5'- uGGGCCCGCGcACCGCggugCCCGUGCc -3' miRNA: 3'- -UCCGGGCGCaUGGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 31982 | 0.83 | 0.067283 |
Target: 5'- uGGGCCCGCGcACCGCggugCCCGUGCc -3' miRNA: 3'- -UCCGGGCGCaUGGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 103563 | 0.82 | 0.072726 |
Target: 5'- gGGGCCC-CGUGCCGCcgCcgCCCGCGCc -3' miRNA: 3'- -UCCGGGcGCAUGGCGa-GaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 53532 | 0.79 | 0.112436 |
Target: 5'- uGGCugCCGUGUugCGCUCUUCggCCGCGCc -3' miRNA: 3'- uCCG--GGCGCAugGCGAGAAG--GGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 51006 | 0.79 | 0.115317 |
Target: 5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3' miRNA: 3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 33774 | 0.79 | 0.118267 |
Target: 5'- gGGGCCCGCGgcgAgCGCUgggcCCCGCGCg -3' miRNA: 3'- -UCCGGGCGCa--UgGCGAgaa-GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 135832 | 0.79 | 0.124379 |
Target: 5'- gGGGCCCGCGgGCgCGCUCgccgCCaGCGCg -3' miRNA: 3'- -UCCGGGCGCaUG-GCGAGaa--GGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 31315 | 0.79 | 0.124379 |
Target: 5'- gGGGCCCGCGgGCgCGCUCgccgCCaGCGCg -3' miRNA: 3'- -UCCGGGCGCaUG-GCGAGaa--GGgCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 31220 | 0.78 | 0.130782 |
Target: 5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3' miRNA: 3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 135737 | 0.78 | 0.130782 |
Target: 5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3' miRNA: 3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 108379 | 0.78 | 0.134097 |
Target: 5'- -uGCCCGCGU-CCGCg---CCCGCGCg -3' miRNA: 3'- ucCGGGCGCAuGGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 116530 | 0.78 | 0.134097 |
Target: 5'- gAGGCCCGCcgcuCCGCg---CCCGCGCg -3' miRNA: 3'- -UCCGGGCGcau-GGCGagaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 81700 | 0.78 | 0.134097 |
Target: 5'- cGGGCCCG-GcGCCGUUCggUCCGCGCg -3' miRNA: 3'- -UCCGGGCgCaUGGCGAGaaGGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 30274 | 0.78 | 0.14096 |
Target: 5'- cGGCCCGCGcgcCCGC-CUggacgcuggCCCGCGCg -3' miRNA: 3'- uCCGGGCGCau-GGCGaGAa--------GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 134791 | 0.78 | 0.14096 |
Target: 5'- cGGCCCGCGcgcCCGC-CUggacgcuggCCCGCGCg -3' miRNA: 3'- uCCGGGCGCau-GGCGaGAa--------GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 78165 | 0.78 | 0.144511 |
Target: 5'- -aGCCCGCGgaccggccGCCGCUCUUCgCCGcCGCc -3' miRNA: 3'- ucCGGGCGCa-------UGGCGAGAAG-GGC-GCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 58488 | 0.78 | 0.148143 |
Target: 5'- cAGGCCgGCGcgcgGCCGCUUUUggcgCCCGCGUc -3' miRNA: 3'- -UCCGGgCGCa---UGGCGAGAA----GGGCGCG- -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 110502 | 0.77 | 0.151858 |
Target: 5'- -uGCCCGCGcgucuCCGCUCcUCCCGCGg -3' miRNA: 3'- ucCGGGCGCau---GGCGAGaAGGGCGCg -5' |
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23564 | 3' | -61.4 | NC_005261.1 | + | 10218 | 0.77 | 0.155657 |
Target: 5'- aGGGCCCGCGccUGCCcagGCggg-CCCGCGCa -3' miRNA: 3'- -UCCGGGCGC--AUGG---CGagaaGGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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