miRNA display CGI


Results 1 - 20 of 684 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 3' -61.4 NC_005261.1 + 126606 1.11 0.000629
Target:  5'- cAGGCCCGCGUACCGCUCUUCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCAUGGCGAGAAGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 136500 0.83 0.067283
Target:  5'- uGGGCCCGCGcACCGCggugCCCGUGCc -3'
miRNA:   3'- -UCCGGGCGCaUGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 31982 0.83 0.067283
Target:  5'- uGGGCCCGCGcACCGCggugCCCGUGCc -3'
miRNA:   3'- -UCCGGGCGCaUGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 103563 0.82 0.072726
Target:  5'- gGGGCCC-CGUGCCGCcgCcgCCCGCGCc -3'
miRNA:   3'- -UCCGGGcGCAUGGCGa-GaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 31315 0.79 0.124379
Target:  5'- gGGGCCCGCGgGCgCGCUCgccgCCaGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGAGaa--GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 51006 0.79 0.115317
Target:  5'- cGGUgCGCGUGCCGCUgUacCCCGUGCa -3'
miRNA:   3'- uCCGgGCGCAUGGCGAgAa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135832 0.79 0.124379
Target:  5'- gGGGCCCGCGgGCgCGCUCgccgCCaGCGCg -3'
miRNA:   3'- -UCCGGGCGCaUG-GCGAGaa--GGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 53532 0.79 0.112436
Target:  5'- uGGCugCCGUGUugCGCUCUUCggCCGCGCc -3'
miRNA:   3'- uCCG--GGCGCAugGCGAGAAG--GGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 33774 0.79 0.118267
Target:  5'- gGGGCCCGCGgcgAgCGCUgggcCCCGCGCg -3'
miRNA:   3'- -UCCGGGCGCa--UgGCGAgaa-GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 58488 0.78 0.148143
Target:  5'- cAGGCCgGCGcgcgGCCGCUUUUggcgCCCGCGUc -3'
miRNA:   3'- -UCCGGgCGCa---UGGCGAGAA----GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 116530 0.78 0.134097
Target:  5'- gAGGCCCGCcgcuCCGCg---CCCGCGCg -3'
miRNA:   3'- -UCCGGGCGcau-GGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 30274 0.78 0.14096
Target:  5'- cGGCCCGCGcgcCCGC-CUggacgcuggCCCGCGCg -3'
miRNA:   3'- uCCGGGCGCau-GGCGaGAa--------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 135737 0.78 0.130782
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
23564 3' -61.4 NC_005261.1 + 31220 0.78 0.130782
Target:  5'- cGGCUCGCGgaccacCCGCUCUUCCCcgagcccugGCGCc -3'
miRNA:   3'- uCCGGGCGCau----GGCGAGAAGGG---------CGCG- -5'
23564 3' -61.4 NC_005261.1 + 81700 0.78 0.134097
Target:  5'- cGGGCCCG-GcGCCGUUCggUCCGCGCg -3'
miRNA:   3'- -UCCGGGCgCaUGGCGAGaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 108379 0.78 0.134097
Target:  5'- -uGCCCGCGU-CCGCg---CCCGCGCg -3'
miRNA:   3'- ucCGGGCGCAuGGCGagaaGGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 78165 0.78 0.144511
Target:  5'- -aGCCCGCGgaccggccGCCGCUCUUCgCCGcCGCc -3'
miRNA:   3'- ucCGGGCGCa-------UGGCGAGAAG-GGC-GCG- -5'
23564 3' -61.4 NC_005261.1 + 134791 0.78 0.14096
Target:  5'- cGGCCCGCGcgcCCGC-CUggacgcuggCCCGCGCg -3'
miRNA:   3'- uCCGGGCGCau-GGCGaGAa--------GGGCGCG- -5'
23564 3' -61.4 NC_005261.1 + 116456 0.77 0.159543
Target:  5'- cGGCCCGCGccgcgGCgGCUCgcCCgGCGCg -3'
miRNA:   3'- uCCGGGCGCa----UGgCGAGaaGGgCGCG- -5'
23564 3' -61.4 NC_005261.1 + 110502 0.77 0.151858
Target:  5'- -uGCCCGCGcgucuCCGCUCcUCCCGCGg -3'
miRNA:   3'- ucCGGGCGCau---GGCGAGaAGGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.