miRNA display CGI


Results 81 - 100 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 63775 0.7 0.807351
Target:  5'- -cGCCGGggGcgGCGCCcccacccccCGCCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacau-----GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 64041 0.66 0.959485
Target:  5'- -gGCgCGGcuc-UGCGCCgcgugGUGCGCCa -3'
miRNA:   3'- gaCG-GUCuuuuACGCGGa----CAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 65162 0.66 0.951547
Target:  5'- -cGCgCAGAAGGUGCGCUcgc-UGCCGu -3'
miRNA:   3'- gaCG-GUCUUUUACGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 65288 0.66 0.959485
Target:  5'- -aGCCGGugccgGCGCCg--GCGCUGc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 66722 0.66 0.959485
Target:  5'- -cGCCGGuuGAUGCGCUucaccauguaguUGUGCacggGCUGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGG------------ACAUG----CGGC- -5'
23564 5' -53.2 NC_005261.1 + 66782 0.7 0.826968
Target:  5'- aUGCUccgGGAGGcgGCGgCUGcGCGCCGc -3'
miRNA:   3'- gACGG---UCUUUuaCGCgGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 66819 0.68 0.903457
Target:  5'- -gGCCGGGccccGCGCCgg-ACGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 67087 0.71 0.781213
Target:  5'- cCUGCCGGGGcg-GCGCUUGagaGCGUCGu -3'
miRNA:   3'- -GACGGUCUUuuaCGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 68119 0.66 0.959485
Target:  5'- uUGCCGGGcacgagGCGCCgagcuucuCGCCGg -3'
miRNA:   3'- gACGGUCUuuua--CGCGGacau----GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 68525 0.67 0.931659
Target:  5'- cCUGCCGGcgccgccgGCGCCcGcGCGCCc -3'
miRNA:   3'- -GACGGUCuuuua---CGCGGaCaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 68742 0.67 0.921768
Target:  5'- -gGCgGGAAGAaGCGCCcGccgggGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGaCa----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 68866 0.77 0.464187
Target:  5'- uCUGCCGcGGcuGUGCGCCgucGUGCGCUGc -3'
miRNA:   3'- -GACGGU-CUuuUACGCGGa--CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 69476 0.72 0.731906
Target:  5'- -gGCCAcauccgcgcGAugcuGGUGCaCCUGUACGCCGg -3'
miRNA:   3'- gaCGGU---------CUu---UUACGcGGACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 69520 0.67 0.921768
Target:  5'- gCUGCCGGAGcugGCGCgg--GCGCUGg -3'
miRNA:   3'- -GACGGUCUUuuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 70100 0.67 0.932707
Target:  5'- -cGCCGgcGAGAAgcucgGCGCCUcGUGC-CCGg -3'
miRNA:   3'- gaCGGU--CUUUUa----CGCGGA-CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 70394 0.66 0.951547
Target:  5'- -gGcCCGGAGAGUGCGgcccuCCUGcgcGCGCCc -3'
miRNA:   3'- gaC-GGUCUUUUACGC-----GGACa--UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 70465 0.71 0.741992
Target:  5'- -gGCCGGggGcgGCGCCUcggACGgCGa -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGAca-UGCgGC- -5'
23564 5' -53.2 NC_005261.1 + 71713 0.69 0.852229
Target:  5'- gCUGCUGGAGAagGCGCCgccaaUGU-CGCUGc -3'
miRNA:   3'- -GACGGUCUUUuaCGCGG-----ACAuGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 72492 0.66 0.945409
Target:  5'- -cGCCAGGA---GCGCCgcgcgaagcggGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGaca--------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 72718 0.72 0.701136
Target:  5'- -cGCUGGGugaugGAGUGCGCCaUG-ACGCCGg -3'
miRNA:   3'- gaCGGUCU-----UUUACGCGG-ACaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.