miRNA display CGI


Results 61 - 80 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 47888 0.66 0.951547
Target:  5'- -aGCaCAGGuuGUGCGCCggaugAUGCUGg -3'
miRNA:   3'- gaCG-GUCUuuUACGCGGaca--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 50838 0.68 0.882911
Target:  5'- -cGCCGcGAGcugGCGCCUGUGgcuCGCCc -3'
miRNA:   3'- gaCGGU-CUUuuaCGCGGACAU---GCGGc -5'
23564 5' -53.2 NC_005261.1 + 51643 0.67 0.927365
Target:  5'- -cGCCAaGGAcgGCGCCgc--CGCCGg -3'
miRNA:   3'- gaCGGUcUUUuaCGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 51976 0.66 0.955637
Target:  5'- gCUGCUGGAccgcgGCGCCgc--CGCCGa -3'
miRNA:   3'- -GACGGUCUuuua-CGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 52936 0.68 0.902808
Target:  5'- -cGCCAGGug--GCGCCaGUcaaacucggagcaGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGaCA-------------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 53325 0.68 0.890002
Target:  5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3'
miRNA:   3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 54169 0.68 0.897524
Target:  5'- uUGCCGGGAAGaccaaggggaggagcGCGCaccgGUGCGCCa -3'
miRNA:   3'- gACGGUCUUUUa--------------CGCGga--CAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 54879 0.68 0.882911
Target:  5'- -gGCCGGAuGAUGCGUCgGcGCGCgCGu -3'
miRNA:   3'- gaCGGUCUuUUACGCGGaCaUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 55258 0.68 0.909813
Target:  5'- -cGCgAGGAGGucUGCGCCcccugGcGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUU--ACGCGGa----CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 58699 0.68 0.915917
Target:  5'- -cGUCAGGGc--GCGCCgcugagagGUGCGCCa -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGa-------CAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 59068 0.7 0.826968
Target:  5'- -gGCCgcGGAGAGcGCGCgCggGUGCGCCGc -3'
miRNA:   3'- gaCGG--UCUUUUaCGCG-Ga-CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 59377 0.68 0.903457
Target:  5'- -cGCCAGcgcccGCGCCacgGCGCCGa -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60168 0.7 0.818158
Target:  5'- gCUGCCGuGGAAGcGCGUCU--GCGCCGc -3'
miRNA:   3'- -GACGGU-CUUUUaCGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60383 0.69 0.868021
Target:  5'- -cGUUGGcGAGGUGCGCCUccaugGCGCCGg -3'
miRNA:   3'- gaCGGUC-UUUUACGCGGAca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60570 0.68 0.896853
Target:  5'- -cGCCc-----UGCGCCUGcagGCGCCGg -3'
miRNA:   3'- gaCGGucuuuuACGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60664 0.71 0.781213
Target:  5'- gUGCCAGGgcgcGGcgGCGCCacUGgcggcgGCGCCGu -3'
miRNA:   3'- gACGGUCU----UUuaCGCGG--ACa-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60853 0.7 0.800009
Target:  5'- -cGgCAGggGGUGCGCCggagACGCgCGg -3'
miRNA:   3'- gaCgGUCuuUUACGCGGaca-UGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 61105 0.66 0.959485
Target:  5'- -cGCCgAGAucgcgcgcUGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGG-UCUuuu-----ACGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 62563 0.7 0.809169
Target:  5'- -cGCCAGc--AUGCGCCccgGCGCCa -3'
miRNA:   3'- gaCGGUCuuuUACGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 62860 0.7 0.809169
Target:  5'- -cGCCAGg----GCGuCCaGUACGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGC-GGaCAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.