miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 34024 0.68 0.914717
Target:  5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3'
miRNA:   3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 35105 0.7 0.809169
Target:  5'- -cGCUGGAGAAcccggGCGCgCUG-GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa----CGCG-GACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 35763 0.78 0.382373
Target:  5'- -cGCCgAGGAGGUccgGCGCCUGcGCGCCGa -3'
miRNA:   3'- gaCGG-UCUUUUA---CGCGGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 36756 0.68 0.896853
Target:  5'- -gGCCAGcug--GCGCCccUGcACGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGG--ACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 37373 0.71 0.790687
Target:  5'- -cGCCcGAGGcgGCGCUgugGUACGCgGa -3'
miRNA:   3'- gaCGGuCUUUuaCGCGGa--CAUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 37955 0.69 0.852229
Target:  5'- uCUGCCGcuucGUGCGCCaccgGcGCGCCGa -3'
miRNA:   3'- -GACGGUcuuuUACGCGGa---CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 39712 0.78 0.417555
Target:  5'- -gGCCGGAucucGCGCCUgcccGUACGCCGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGA----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 41600 0.69 0.852229
Target:  5'- cCUGCgAGAAGAUcgcccgGCGgCUGcGCGCCa -3'
miRNA:   3'- -GACGgUCUUUUA------CGCgGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 41883 0.67 0.927365
Target:  5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 41918 0.67 0.927365
Target:  5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 42385 0.67 0.932707
Target:  5'- gUGCCGGcccagcUGCGCCUGcACGUgGu -3'
miRNA:   3'- gACGGUCuuuu--ACGCGGACaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 43012 0.69 0.875582
Target:  5'- -gGCCAGGGcGUguacaGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGGUCUUuUA-----CGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 43431 0.68 0.896853
Target:  5'- -cGCCGgcGggGAgcuggcucgGCGCCUGgacguCGCCGg -3'
miRNA:   3'- gaCGGU--CuuUUa--------CGCGGACau---GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 43962 0.67 0.942629
Target:  5'- -cGCCaAGAGccucGcgGCGCCgcccUGCGCCGu -3'
miRNA:   3'- gaCGG-UCUU----UuaCGCGGac--AUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 44190 0.68 0.909813
Target:  5'- -cGCUGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 44862 0.66 0.955637
Target:  5'- -cGCgAGGAAGaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 44957 0.72 0.731906
Target:  5'- cCUGCCGGuguuGGAggcGCGCgCUGgcGCGCCGg -3'
miRNA:   3'- -GACGGUCu---UUUa--CGCG-GACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 45410 0.68 0.890002
Target:  5'- gUGCCuGcuGcgGCGCCUGcgccCGCCGc -3'
miRNA:   3'- gACGGuCuuUuaCGCGGACau--GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 46920 0.69 0.844011
Target:  5'- -gGUCAGGugcgcGAUGCGCUUGUugGCg- -3'
miRNA:   3'- gaCGGUCUu----UUACGCGGACAugCGgc -5'
23564 5' -53.2 NC_005261.1 + 47252 0.66 0.951547
Target:  5'- -aGCCgAGGAccUGCGCCggccCGCCGg -3'
miRNA:   3'- gaCGG-UCUUuuACGCGGacauGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.