miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 127630 0.67 0.942629
Target:  5'- -gGCCGGAcgcGAcgGCGgCg--GCGCCGg -3'
miRNA:   3'- gaCGGUCU---UUuaCGCgGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29115 0.67 0.937794
Target:  5'- -cGCCgAGggGAgcccugGCGCCgGgggGCGCCc -3'
miRNA:   3'- gaCGG-UCuuUUa-----CGCGGaCa--UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 86586 0.67 0.937794
Target:  5'- -aGCCGGcgGcgGCGCCguccuugGCGUCGg -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGaca----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 33596 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 31009 0.67 0.941682
Target:  5'- -gGCCAGggGcccgGCGCCggccaaaagccgGcGCGCCGc -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGa-----------CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 5267 0.67 0.937794
Target:  5'- -cGCCGGGAGAcGCcauggccgGCCgcgGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCUUUUaCG--------CGGa--CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 91735 0.67 0.937794
Target:  5'- -cGCCGGGc--UGCGCCccgcGgaggGCGCCGa -3'
miRNA:   3'- gaCGGUCUuuuACGCGGa---Ca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80617 0.67 0.932707
Target:  5'- --cCCGGAGGGcUGCGCggcGUGCGCCGc -3'
miRNA:   3'- gacGGUCUUUU-ACGCGga-CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 76989 0.67 0.937297
Target:  5'- -gGCCAGcGAGUcgagcucGCGCCga-ACGCCGa -3'
miRNA:   3'- gaCGGUCuUUUA-------CGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 133633 0.67 0.937794
Target:  5'- -cGCCgAGggGAgcccugGCGCCgGgggGCGCCc -3'
miRNA:   3'- gaCGG-UCuuUUa-----CGCGGaCa--UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 430 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 29446 0.67 0.937794
Target:  5'- gCUGCCaacuGGAAGGUGC-CCaUGgcUGCCGu -3'
miRNA:   3'- -GACGG----UCUUUUACGcGG-ACauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 109784 0.67 0.937794
Target:  5'- -cGCCGGGAGAcGCcauggccgGCCgcgGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCUUUUaCG--------CGGa--CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 138113 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 135527 0.67 0.941682
Target:  5'- -gGCCAGggGcccgGCGCCggccaaaagccgGcGCGCCGc -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGa-----------CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 6741 0.67 0.942629
Target:  5'- gUGCCGGAAGAagGCGUCgacgGcGCGCUc -3'
miRNA:   3'- gACGGUCUUUUa-CGCGGa---CaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 106473 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 43962 0.67 0.942629
Target:  5'- -cGCCaAGAGccucGcgGCGCCgcccUGCGCCGu -3'
miRNA:   3'- gaCGG-UCUU----UuaCGCGGac--AUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 75756 0.67 0.942629
Target:  5'- uCUGCaaCGGGGAcgcgGUGUGCCUGcuucCGCCGc -3'
miRNA:   3'- -GACG--GUCUUU----UACGCGGACau--GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108248 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.