miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 16383 0.7 0.809169
Target:  5'- -aGCCGcGGGcugcugGCGCCgGUGCGCCGc -3'
miRNA:   3'- gaCGGU-CUUuua---CGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 35105 0.7 0.809169
Target:  5'- -cGCUGGAGAAcccggGCGCgCUG-GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa----CGCG-GACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 62860 0.7 0.809169
Target:  5'- -cGCCAGg----GCGuCCaGUACGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGC-GGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60168 0.7 0.818158
Target:  5'- gCUGCCGuGGAAGcGCGUCU--GCGCCGc -3'
miRNA:   3'- -GACGGU-CUUUUaCGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 9091 0.7 0.82522
Target:  5'- uCUGCCAGuguccucacguGGUGUGCCgagagGgcCGCCGg -3'
miRNA:   3'- -GACGGUCuu---------UUACGCGGa----CauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 113609 0.7 0.82522
Target:  5'- uCUGCCAGuguccucacguGGUGUGCCgagagGgcCGCCGg -3'
miRNA:   3'- -GACGGUCuu---------UUACGCGGa----CauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 125121 0.7 0.826968
Target:  5'- -cGCuCGGguGGUGCGUCUGUGuccauagcauCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUACGCGGACAU----------GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 66782 0.7 0.826968
Target:  5'- aUGCUccgGGAGGcgGCGgCUGcGCGCCGc -3'
miRNA:   3'- gACGG---UCUUUuaCGCgGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 59068 0.7 0.826968
Target:  5'- -gGCCgcGGAGAGcGCGCgCggGUGCGCCGc -3'
miRNA:   3'- gaCGG--UCUUUUaCGCG-Ga-CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 89949 0.7 0.826968
Target:  5'- -cGCUGGAAGcgGCGCUUGcGCGCg- -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGACaUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 98425 0.7 0.826968
Target:  5'- -gGCCAGAGccugGCGCCggcgGccGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGa---Ca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 110983 0.7 0.835588
Target:  5'- -cGCCGccuucGUGCGCCUGgggACGCUGc -3'
miRNA:   3'- gaCGGUcuuu-UACGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 90223 0.7 0.835588
Target:  5'- uCUGCCGGcggggcGAcgGCGgCUGcgACGCCGu -3'
miRNA:   3'- -GACGGUCu-----UUuaCGCgGACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 26111 0.7 0.835588
Target:  5'- gCUGCCGGuaca-GCGCCgucagGUACGCg- -3'
miRNA:   3'- -GACGGUCuuuuaCGCGGa----CAUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 100839 0.7 0.835588
Target:  5'- -gGCCGGGAGcucgGCGaCCUGcGCGUCGa -3'
miRNA:   3'- gaCGGUCUUUua--CGC-GGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 46920 0.69 0.844011
Target:  5'- -gGUCAGGugcgcGAUGCGCUUGUugGCg- -3'
miRNA:   3'- gaCGGUCUu----UUACGCGGACAugCGgc -5'
23564 5' -53.2 NC_005261.1 + 21261 0.69 0.844011
Target:  5'- gUGCCGcaacgagcacGAGGAcG-GCCUGUACGCCa -3'
miRNA:   3'- gACGGU----------CUUUUaCgCGGACAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 101659 0.69 0.852229
Target:  5'- gUGCuCAGcAucUGCGCCUcGUAgGCCGa -3'
miRNA:   3'- gACG-GUCuUuuACGCGGA-CAUgCGGC- -5'
23564 5' -53.2 NC_005261.1 + 100808 0.69 0.852229
Target:  5'- --cCCGGAAGggcgcGUGCGCCU--GCGCCGc -3'
miRNA:   3'- gacGGUCUUU-----UACGCGGAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 37955 0.69 0.852229
Target:  5'- uCUGCCGcuucGUGCGCCaccgGcGCGCCGa -3'
miRNA:   3'- -GACGGUcuuuUACGCGGa---CaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.