Results 61 - 80 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 37955 | 0.69 | 0.852229 |
Target: 5'- uCUGCCGcuucGUGCGCCaccgGcGCGCCGa -3' miRNA: 3'- -GACGGUcuuuUACGCGGa---CaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 100808 | 0.69 | 0.852229 |
Target: 5'- --cCCGGAAGggcgcGUGCGCCU--GCGCCGc -3' miRNA: 3'- gacGGUCUUU-----UACGCGGAcaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 30001 | 0.69 | 0.860235 |
Target: 5'- -cGCCGGGcacGUGCGCCaugcUGgagcGCGCCGu -3' miRNA: 3'- gaCGGUCUuu-UACGCGG----ACa---UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 102825 | 0.69 | 0.860235 |
Target: 5'- -cGCCGGuc--UGCGCCUc-GCGCCGc -3' miRNA: 3'- gaCGGUCuuuuACGCGGAcaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 60383 | 0.69 | 0.868021 |
Target: 5'- -cGUUGGcGAGGUGCGCCUccaugGCGCCGg -3' miRNA: 3'- gaCGGUC-UUUUACGCGGAca---UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 93355 | 0.69 | 0.875582 |
Target: 5'- -cGCgCAGcgc--GCGCCaGUGCGCCGg -3' miRNA: 3'- gaCG-GUCuuuuaCGCGGaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 43012 | 0.69 | 0.875582 |
Target: 5'- -gGCCAGGGcGUguacaGCGCC-GUGCGCUGc -3' miRNA: 3'- gaCGGUCUUuUA-----CGCGGaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 79105 | 0.69 | 0.875582 |
Target: 5'- gCUGCggaggCGGGAGAUGUaCCgGUACGCCa -3' miRNA: 3'- -GACG-----GUCUUUUACGcGGaCAUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 94642 | 0.69 | 0.878541 |
Target: 5'- -cGCCGGAGAcgGCGUCgcgcacggcgaaGCGCCGc -3' miRNA: 3'- gaCGGUCUUUuaCGCGGaca---------UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 113649 | 0.68 | 0.882911 |
Target: 5'- -cGaCCAGGA---GCGCCUGaucgaccucUGCGCCGa -3' miRNA: 3'- gaC-GGUCUUuuaCGCGGAC---------AUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 54879 | 0.68 | 0.882911 |
Target: 5'- -gGCCGGAuGAUGCGUCgGcGCGCgCGu -3' miRNA: 3'- gaCGGUCUuUUACGCGGaCaUGCG-GC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 81443 | 0.68 | 0.882911 |
Target: 5'- gCUGCCGGAAgugggcaaccGcgGCGUCUGagaAgGCCGg -3' miRNA: 3'- -GACGGUCUU----------UuaCGCGGACa--UgCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 50838 | 0.68 | 0.882911 |
Target: 5'- -cGCCGcGAGcugGCGCCUGUGgcuCGCCc -3' miRNA: 3'- gaCGGU-CUUuuaCGCGGACAU---GCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 53325 | 0.68 | 0.890002 |
Target: 5'- -gGCCgcAGGu-GUGCGCCUcUGCGCCc -3' miRNA: 3'- gaCGG--UCUuuUACGCGGAcAUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 45410 | 0.68 | 0.890002 |
Target: 5'- gUGCCuGcuGcgGCGCCUGcgccCGCCGc -3' miRNA: 3'- gACGGuCuuUuaCGCGGACau--GCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 12124 | 0.68 | 0.890002 |
Target: 5'- -cGCCAGGAug-GCGCCcgc-CGCCGc -3' miRNA: 3'- gaCGGUCUUuuaCGCGGacauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 103287 | 0.68 | 0.894142 |
Target: 5'- -cGCCGGGcccGGGUcGCGCCggccgccccccgcGUGCGCCGc -3' miRNA: 3'- gaCGGUCU---UUUA-CGCGGa------------CAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 28765 | 0.68 | 0.896853 |
Target: 5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3' miRNA: 3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 118483 | 0.68 | 0.896853 |
Target: 5'- uCUGCCGGu--AUGCGgcgcugcggacCCUG-GCGCCGc -3' miRNA: 3'- -GACGGUCuuuUACGC-----------GGACaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 3843 | 0.68 | 0.896853 |
Target: 5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3' miRNA: 3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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