Results 61 - 80 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 12891 | 0.71 | 0.790687 |
Target: 5'- cCUGCUGGAcgcccUGCGCgCUGcggACGCCGa -3' miRNA: 3'- -GACGGUCUuuu--ACGCG-GACa--UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 83031 | 0.71 | 0.790687 |
Target: 5'- -cGCCGGAucc-GCGCUacgccGUGCGCCGa -3' miRNA: 3'- gaCGGUCUuuuaCGCGGa----CAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 26111 | 0.7 | 0.835588 |
Target: 5'- gCUGCCGGuaca-GCGCCgucagGUACGCg- -3' miRNA: 3'- -GACGGUCuuuuaCGCGGa----CAUGCGgc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 90223 | 0.7 | 0.835588 |
Target: 5'- uCUGCCGGcggggcGAcgGCGgCUGcgACGCCGu -3' miRNA: 3'- -GACGGUCu-----UUuaCGCgGACa-UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 46920 | 0.69 | 0.844011 |
Target: 5'- -gGUCAGGugcgcGAUGCGCUUGUugGCg- -3' miRNA: 3'- gaCGGUCUu----UUACGCGGACAugCGgc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 71713 | 0.69 | 0.852229 |
Target: 5'- gCUGCUGGAGAagGCGCCgccaaUGU-CGCUGc -3' miRNA: 3'- -GACGGUCUUUuaCGCGG-----ACAuGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 37955 | 0.69 | 0.852229 |
Target: 5'- uCUGCCGcuucGUGCGCCaccgGcGCGCCGa -3' miRNA: 3'- -GACGGUcuuuUACGCGGa---CaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 41600 | 0.69 | 0.852229 |
Target: 5'- cCUGCgAGAAGAUcgcccgGCGgCUGcGCGCCa -3' miRNA: 3'- -GACGgUCUUUUA------CGCgGACaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 30001 | 0.69 | 0.860235 |
Target: 5'- -cGCCGGGcacGUGCGCCaugcUGgagcGCGCCGu -3' miRNA: 3'- gaCGGUCUuu-UACGCGG----ACa---UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 94642 | 0.69 | 0.878541 |
Target: 5'- -cGCCGGAGAcgGCGUCgcgcacggcgaaGCGCCGc -3' miRNA: 3'- gaCGGUCUUUuaCGCGGaca---------UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 98425 | 0.7 | 0.826968 |
Target: 5'- -gGCCAGAGccugGCGCCggcgGccGCGCCGc -3' miRNA: 3'- gaCGGUCUUuua-CGCGGa---Ca-UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 89949 | 0.7 | 0.826968 |
Target: 5'- -cGCUGGAAGcgGCGCUUGcGCGCg- -3' miRNA: 3'- gaCGGUCUUUuaCGCGGACaUGCGgc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 60853 | 0.7 | 0.800009 |
Target: 5'- -cGgCAGggGGUGCGCCggagACGCgCGg -3' miRNA: 3'- gaCgGUCuuUUACGCGGaca-UGCG-GC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 1728 | 0.7 | 0.800009 |
Target: 5'- -cGCCGGAGcagGCGUCg--GCGCCGa -3' miRNA: 3'- gaCGGUCUUuuaCGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 63775 | 0.7 | 0.807351 |
Target: 5'- -cGCCGGggGcgGCGCCcccacccccCGCCGg -3' miRNA: 3'- gaCGGUCuuUuaCGCGGacau-----GCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 16383 | 0.7 | 0.809169 |
Target: 5'- -aGCCGcGGGcugcugGCGCCgGUGCGCCGc -3' miRNA: 3'- gaCGGU-CUUuua---CGCGGaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 35105 | 0.7 | 0.809169 |
Target: 5'- -cGCUGGAGAAcccggGCGCgCUG-GCGCCGg -3' miRNA: 3'- gaCGGUCUUUUa----CGCG-GACaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 62860 | 0.7 | 0.809169 |
Target: 5'- -cGCCAGg----GCGuCCaGUACGCCGg -3' miRNA: 3'- gaCGGUCuuuuaCGC-GGaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 113609 | 0.7 | 0.82522 |
Target: 5'- uCUGCCAGuguccucacguGGUGUGCCgagagGgcCGCCGg -3' miRNA: 3'- -GACGGUCuu---------UUACGCGGa----CauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 66782 | 0.7 | 0.826968 |
Target: 5'- aUGCUccgGGAGGcgGCGgCUGcGCGCCGc -3' miRNA: 3'- gACGG---UCUUUuaCGCgGACaUGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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