Results 61 - 80 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 68525 | 0.67 | 0.931659 |
Target: 5'- cCUGCCGGcgccgccgGCGCCcGcGCGCCc -3' miRNA: 3'- -GACGGUCuuuua---CGCGGaCaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 135605 | 0.67 | 0.927365 |
Target: 5'- gUGCUGGAGAAccUGCGgCUGaagcugGCGCCc -3' miRNA: 3'- gACGGUCUUUU--ACGCgGACa-----UGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 108737 | 0.67 | 0.927365 |
Target: 5'- -gGCCAGcgGcgGCGCCgcgGCGuCCGc -3' miRNA: 3'- gaCGGUCuuUuaCGCGGacaUGC-GGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 86488 | 0.67 | 0.927365 |
Target: 5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3' miRNA: 3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 51643 | 0.67 | 0.927365 |
Target: 5'- -cGCCAaGGAcgGCGCCgc--CGCCGg -3' miRNA: 3'- gaCGGUcUUUuaCGCGGacauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 41918 | 0.67 | 0.927365 |
Target: 5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3' miRNA: 3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 41883 | 0.67 | 0.927365 |
Target: 5'- -gGCCAGucAggGCGUCagGUGCGCgCGg -3' miRNA: 3'- gaCGGUCuuUuaCGCGGa-CAUGCG-GC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 69520 | 0.67 | 0.921768 |
Target: 5'- gCUGCCGGAGcugGCGCgg--GCGCUGg -3' miRNA: 3'- -GACGGUCUUuuaCGCGgacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 85711 | 0.67 | 0.921768 |
Target: 5'- gCUGCCcgcAGAAGAUGCcgugGCaCUGgcugaGCGCCa -3' miRNA: 3'- -GACGG---UCUUUUACG----CG-GACa----UGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 84669 | 0.67 | 0.921768 |
Target: 5'- -gGCCGcu-AGUGCGCCUGg--GCCGc -3' miRNA: 3'- gaCGGUcuuUUACGCGGACaugCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 68742 | 0.67 | 0.921768 |
Target: 5'- -gGCgGGAAGAaGCGCCcGccgggGCGCCGc -3' miRNA: 3'- gaCGgUCUUUUaCGCGGaCa----UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 109057 | 0.67 | 0.921194 |
Target: 5'- -cGCCAGGuagcccAGcgGCGCCUcggcgaucaugccGUugGCCa -3' miRNA: 3'- gaCGGUCU------UUuaCGCGGA-------------CAugCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 109449 | 0.68 | 0.918288 |
Target: 5'- -cGCCAGAGAGgcaacccccgcuucGCGCgUGcGCGCCc -3' miRNA: 3'- gaCGGUCUUUUa-------------CGCGgACaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 33686 | 0.68 | 0.915917 |
Target: 5'- cCUGgCGGAcgccAAGcUGCGCCUGgugGCgGCCGc -3' miRNA: 3'- -GACgGUCU----UUU-ACGCGGACa--UG-CGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 76709 | 0.68 | 0.915917 |
Target: 5'- uUGCCGGAGAAggcccGgGCCU---CGCCGg -3' miRNA: 3'- gACGGUCUUUUa----CgCGGAcauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 58699 | 0.68 | 0.915917 |
Target: 5'- -cGUCAGGGc--GCGCCgcugagagGUGCGCCa -3' miRNA: 3'- gaCGGUCUUuuaCGCGGa-------CAUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 34024 | 0.68 | 0.914717 |
Target: 5'- -cGCCGcgcgcgaGCGCCUGgACGCCGu -3' miRNA: 3'- gaCGGUcuuuua-CGCGGACaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 134376 | 0.68 | 0.909813 |
Target: 5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3' miRNA: 3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 44190 | 0.68 | 0.909813 |
Target: 5'- -cGCUGGggGGgcGCGCCgGgcCGCCGa -3' miRNA: 3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 80881 | 0.68 | 0.909813 |
Target: 5'- -cGCgGGGAGGUcGUGCCgGUgaacgGCGCCGg -3' miRNA: 3'- gaCGgUCUUUUA-CGCGGaCA-----UGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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