miRNA display CGI


Results 81 - 100 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 134376 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80881 0.68 0.909813
Target:  5'- -cGCgGGGAGGUcGUGCCgGUgaacgGCGCCGg -3'
miRNA:   3'- gaCGgUCUUUUA-CGCGGaCA-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 44190 0.68 0.909813
Target:  5'- -cGCUGGggGGgcGCGCCgGgcCGCCGa -3'
miRNA:   3'- gaCGGUCuuUUa-CGCGGaCauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 20902 0.68 0.909813
Target:  5'- -gGCgCGGGcaaGGAUGCGCUUGcugcccGCGCCGg -3'
miRNA:   3'- gaCG-GUCU---UUUACGCGGACa-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29859 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 19917 0.68 0.903457
Target:  5'- -gGCCAGcagcgcggugcgGAAGUGCGCCccgGUGC-CCGc -3'
miRNA:   3'- gaCGGUC------------UUUUACGCGGa--CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 137572 0.68 0.903457
Target:  5'- -gGCCAGGAcucgGCGCCgGggacgcgGCGCUGg -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaCa------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 33054 0.68 0.903457
Target:  5'- -gGCCAGGAcucgGCGCCgGggacgcgGCGCUGg -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaCa------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 66819 0.68 0.903457
Target:  5'- -gGCCGGGccccGCGCCgg-ACGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 59377 0.68 0.903457
Target:  5'- -cGCCAGcgcccGCGCCacgGCGCCGa -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 128253 0.68 0.903457
Target:  5'- -aGCCGGAAGcagaGCCUGUAUGCg- -3'
miRNA:   3'- gaCGGUCUUUuacgCGGACAUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 77624 0.68 0.903457
Target:  5'- -aGCCAGAucaugGC-CCUGgccgGCGCCa -3'
miRNA:   3'- gaCGGUCUuuua-CGcGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 52936 0.68 0.902808
Target:  5'- -cGCCAGGug--GCGCCaGUcaaacucggagcaGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGaCA-------------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 54169 0.68 0.897524
Target:  5'- uUGCCGGGAAGaccaaggggaggagcGCGCaccgGUGCGCCa -3'
miRNA:   3'- gACGGUCUUUUa--------------CGCGga--CAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 32111 0.68 0.896853
Target:  5'- uUGCCGGcgcgcgcGCGCCggcgACGCCGg -3'
miRNA:   3'- gACGGUCuuuua--CGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29868 0.68 0.896853
Target:  5'- -cGCgGGcaGGGAUGCGCCUGcgACGgCGg -3'
miRNA:   3'- gaCGgUC--UUUUACGCGGACa-UGCgGC- -5'
23564 5' -53.2 NC_005261.1 + 130107 0.68 0.896853
Target:  5'- -cGCCAGcGAcUGCGCCUuggcgagccgccGcGCGCCGu -3'
miRNA:   3'- gaCGGUCuUUuACGCGGA------------CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 133282 0.68 0.896853
Target:  5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 108360 0.68 0.896853
Target:  5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60570 0.68 0.896853
Target:  5'- -cGCCc-----UGCGCCUGcagGCGCCGg -3'
miRNA:   3'- gaCGGucuuuuACGCGGACa--UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.