miRNA display CGI


Results 21 - 40 of 183 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 21261 0.69 0.844011
Target:  5'- gUGCCGcaacgagcacGAGGAcG-GCCUGUACGCCa -3'
miRNA:   3'- gACGGU----------CUUUUaCgCGGACAUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 22656 0.66 0.951547
Target:  5'- -cGCUGGcg---GCGCCUGggcgGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 22723 0.68 0.909813
Target:  5'- -aGCCGGAGGAccaGCGCCaGUcggGCGCgGg -3'
miRNA:   3'- gaCGGUCUUUUa--CGCGGaCA---UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 23907 0.66 0.963098
Target:  5'- -aGCCAGuccaccuUGCGCCgg-ACuGCCGg -3'
miRNA:   3'- gaCGGUCuuuu---ACGCGGacaUG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 26111 0.7 0.835588
Target:  5'- gCUGCCGGuaca-GCGCCgucagGUACGCg- -3'
miRNA:   3'- -GACGGUCuuuuaCGCGGa----CAUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 28765 0.68 0.896853
Target:  5'- -gGCCGGGg---GCGCCUGggccgcgGCGCgGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa------UGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 29115 0.67 0.937794
Target:  5'- -cGCCgAGggGAgcccugGCGCCgGgggGCGCCc -3'
miRNA:   3'- gaCGG-UCuuUUa-----CGCGGaCa--UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 29446 0.67 0.937794
Target:  5'- gCUGCCaacuGGAAGGUGC-CCaUGgcUGCCGu -3'
miRNA:   3'- -GACGG----UCUUUUACGcGG-ACauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29859 0.68 0.909813
Target:  5'- -cGCCGGccgcGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 29868 0.68 0.896853
Target:  5'- -cGCgGGcaGGGAUGCGCCUGcgACGgCGg -3'
miRNA:   3'- gaCGgUC--UUUUACGCGGACa-UGCgGC- -5'
23564 5' -53.2 NC_005261.1 + 29965 0.77 0.426654
Target:  5'- -cGCUAGAGGcgGCGCg-GUGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGgaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 30001 0.69 0.860235
Target:  5'- -cGCCGGGcacGUGCGCCaugcUGgagcGCGCCGu -3'
miRNA:   3'- gaCGGUCUuu-UACGCGG----ACa---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31009 0.67 0.941682
Target:  5'- -gGCCAGggGcccgGCGCCggccaaaagccgGcGCGCCGc -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGa-----------CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31294 0.66 0.959485
Target:  5'- -gGCCG--AGGUGCGCgUGU-CGCUGg -3'
miRNA:   3'- gaCGGUcuUUUACGCGgACAuGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31423 0.71 0.781213
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31789 0.66 0.963098
Target:  5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 32111 0.68 0.896853
Target:  5'- uUGCCGGcgcgcgcGCGCCggcgACGCCGg -3'
miRNA:   3'- gACGGUCuuuua--CGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 33054 0.68 0.903457
Target:  5'- -gGCCAGGAcucgGCGCCgGggacgcgGCGCUGg -3'
miRNA:   3'- gaCGGUCUUuua-CGCGGaCa------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 33596 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 33686 0.68 0.915917
Target:  5'- cCUGgCGGAcgccAAGcUGCGCCUGgugGCgGCCGc -3'
miRNA:   3'- -GACgGUCU----UUU-ACGCGGACa--UG-CGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.