miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 126503 0.66 0.955637
Target:  5'- gCUGCCGcAGGcgGUcuGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUcUUUuaCG--CGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 125121 0.7 0.826968
Target:  5'- -cGCuCGGguGGUGCGUCUGUGuccauagcauCGCCGg -3'
miRNA:   3'- gaCG-GUCuuUUACGCGGACAU----------GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 124031 0.66 0.946765
Target:  5'- -aGCCGGGcgccucuGAGUGCGCUa--GCGCCa -3'
miRNA:   3'- gaCGGUCU-------UUUACGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 120360 0.67 0.932707
Target:  5'- -cGCUGGAcgGUGCGCgacgGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuUACGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 118483 0.68 0.896853
Target:  5'- uCUGCCGGu--AUGCGgcgcugcggacCCUG-GCGCCGc -3'
miRNA:   3'- -GACGGUCuuuUACGC-----------GGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 115617 0.71 0.761848
Target:  5'- -gGCgGGAcgcgacgggacgAGAUGCGCCggcagcGUGCGCCGc -3'
miRNA:   3'- gaCGgUCU------------UUUACGCGGa-----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 115154 0.66 0.959485
Target:  5'- -aGCCGGggGucggGCGCCUccUGCGCg- -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGAc-AUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 113649 0.68 0.882911
Target:  5'- -cGaCCAGGA---GCGCCUGaucgaccucUGCGCCGa -3'
miRNA:   3'- gaC-GGUCUUuuaCGCGGAC---------AUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 113609 0.7 0.82522
Target:  5'- uCUGCCAGuguccucacguGGUGUGCCgagagGgcCGCCGg -3'
miRNA:   3'- -GACGGUCuu---------UUACGCGGa----CauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 110983 0.7 0.835588
Target:  5'- -cGCCGccuucGUGCGCCUGgggACGCUGc -3'
miRNA:   3'- gaCGGUcuuu-UACGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 109784 0.67 0.937794
Target:  5'- -cGCCGGGAGAcGCcauggccgGCCgcgGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCUUUUaCG--------CGGa--CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 109449 0.68 0.918288
Target:  5'- -cGCCAGAGAGgcaacccccgcuucGCGCgUGcGCGCCc -3'
miRNA:   3'- gaCGGUCUUUUa-------------CGCGgACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 109057 0.67 0.921194
Target:  5'- -cGCCAGGuagcccAGcgGCGCCUcggcgaucaugccGUugGCCa -3'
miRNA:   3'- gaCGGUCU------UUuaCGCGGA-------------CAugCGGc -5'
23564 5' -53.2 NC_005261.1 + 108737 0.67 0.927365
Target:  5'- -gGCCAGcgGcgGCGCCgcgGCGuCCGc -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGC-GGC- -5'
23564 5' -53.2 NC_005261.1 + 108360 0.68 0.896853
Target:  5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108248 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108138 0.71 0.790687
Target:  5'- gCUGCCcGGAGcacGCGCUccggGUGCGCCGc -3'
miRNA:   3'- -GACGGuCUUUua-CGCGGa---CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 106473 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 104403 0.66 0.951547
Target:  5'- -cGCCAuAAAGcGCGCCgaaacgGCGCCGc -3'
miRNA:   3'- gaCGGUcUUUUaCGCGGaca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 104007 0.65 0.965821
Target:  5'- -gGCCAGuauggcgcGCGCgCUGUacugcGCGCCGc -3'
miRNA:   3'- gaCGGUCuuuua---CGCG-GACA-----UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.