miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 430 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 1728 0.7 0.800009
Target:  5'- -cGCCGGAGcagGCGUCg--GCGCCGa -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 1956 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 3621 0.71 0.790687
Target:  5'- gCUGCCcGGAGcacGCGCUccggGUGCGCCGc -3'
miRNA:   3'- -GACGGuCUUUua-CGCGGa---CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 3731 0.67 0.932707
Target:  5'- gCUGCCGGAcgcgccGGcgGCGCacc-GCGCCGc -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 3843 0.68 0.896853
Target:  5'- gCUGgCGGcAGcgGCGCCg--GCGCCGc -3'
miRNA:   3'- -GACgGUCuUUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 5267 0.67 0.937794
Target:  5'- -cGCCGGGAGAcGCcauggccgGCCgcgGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCUUUUaCG--------CGGa--CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 6741 0.67 0.942629
Target:  5'- gUGCCGGAAGAagGCGUCgacgGcGCGCUc -3'
miRNA:   3'- gACGGUCUUUUa-CGCGGa---CaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 9091 0.7 0.82522
Target:  5'- uCUGCCAGuguccucacguGGUGUGCCgagagGgcCGCCGg -3'
miRNA:   3'- -GACGGUCuu---------UUACGCGGa----CauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 11099 0.71 0.761848
Target:  5'- -gGCgGGAcgcgacgggacgAGAUGCGCCggcagcGUGCGCCGc -3'
miRNA:   3'- gaCGgUCU------------UUUACGCGGa-----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12124 0.68 0.890002
Target:  5'- -cGCCAGGAug-GCGCCcgc-CGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12804 0.73 0.659288
Target:  5'- -cGCUAGGGAuggGCgGCCUGaGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua-CG-CGGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12891 0.71 0.790687
Target:  5'- cCUGCUGGAcgcccUGCGCgCUGcggACGCCGa -3'
miRNA:   3'- -GACGGUCUuuu--ACGCG-GACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 13682 0.75 0.543928
Target:  5'- -cGCCuGGGAGAUG-GCCgGUACGCCGc -3'
miRNA:   3'- gaCGG-UCUUUUACgCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 14132 0.66 0.959485
Target:  5'- gUGCCGGcccuGUGCGCgCgcuacgcggGCGCCGg -3'
miRNA:   3'- gACGGUCuuu-UACGCG-Gaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 15191 0.66 0.955637
Target:  5'- -gGgCAGAGAAgggGUGCCUGc-UGCCGa -3'
miRNA:   3'- gaCgGUCUUUUa--CGCGGACauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 16383 0.7 0.809169
Target:  5'- -aGCCGcGGGcugcugGCGCCgGUGCGCCGc -3'
miRNA:   3'- gaCGGU-CUUuua---CGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 19299 0.66 0.955637
Target:  5'- -gGCCAGccgcGcgGCGCCgcgcccgcgGCGCCGg -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 19917 0.68 0.903457
Target:  5'- -gGCCAGcagcgcggugcgGAAGUGCGCCccgGUGC-CCGc -3'
miRNA:   3'- gaCGGUC------------UUUUACGCGGa--CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 20902 0.68 0.909813
Target:  5'- -gGCgCGGGcaaGGAUGCGCUUGcugcccGCGCCGg -3'
miRNA:   3'- gaCG-GUCU---UUUACGCGGACa-----UGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.