miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 83031 0.71 0.790687
Target:  5'- -cGCCGGAucc-GCGCUacgccGUGCGCCGa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGa----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 70465 0.71 0.741992
Target:  5'- -gGCCGGggGcgGCGCCUcggACGgCGa -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGAca-UGCgGC- -5'
23564 5' -53.2 NC_005261.1 + 78809 0.71 0.761848
Target:  5'- cCUGCCGGGccgcgcGAcaGCGCCg--GCGCCGg -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 115617 0.71 0.761848
Target:  5'- -gGCgGGAcgcgacgggacgAGAUGCGCCggcagcGUGCGCCGc -3'
miRNA:   3'- gaCGgUCU------------UUUACGCGGa-----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 135940 0.71 0.781213
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60664 0.71 0.781213
Target:  5'- gUGCCAGGgcgcGGcgGCGCCacUGgcggcgGCGCCGu -3'
miRNA:   3'- gACGGUCU----UUuaCGCGG--ACa-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 67087 0.71 0.781213
Target:  5'- cCUGCCGGGGcg-GCGCUUGagaGCGUCGu -3'
miRNA:   3'- -GACGGUCUUuuaCGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108138 0.71 0.790687
Target:  5'- gCUGCCcGGAGcacGCGCUccggGUGCGCCGc -3'
miRNA:   3'- -GACGGuCUUUua-CGCGGa---CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12891 0.71 0.790687
Target:  5'- cCUGCUGGAcgcccUGCGCgCUGcggACGCCGa -3'
miRNA:   3'- -GACGGUCUuuu--ACGCG-GACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 44957 0.72 0.731906
Target:  5'- cCUGCCGGuguuGGAggcGCGCgCUGgcGCGCCGg -3'
miRNA:   3'- -GACGGUCu---UUUa--CGCG-GACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 72718 0.72 0.701136
Target:  5'- -cGCUGGGugaugGAGUGCGCCaUG-ACGCCGg -3'
miRNA:   3'- gaCGGUCU-----UUUACGCGG-ACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 98367 0.73 0.680296
Target:  5'- cCUGCUGGcc-GUGUGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUCuuuUACGCGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 84226 0.78 0.417555
Target:  5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3'
miRNA:   3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 39712 0.78 0.417555
Target:  5'- -gGCCGGAucucGCGCCUgcccGUACGCCGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGA----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 134483 0.77 0.426654
Target:  5'- -cGCUAGAGGcgGCGCg-GUGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUuaCGCGgaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 83730 0.76 0.513396
Target:  5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 13682 0.75 0.543928
Target:  5'- -cGCCuGGGAGAUG-GCCgGUACGCCGc -3'
miRNA:   3'- gaCGG-UCUUUUACgCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 101602 0.74 0.627623
Target:  5'- -cGCCGGcuuc-GCGCCguuUGUGCGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGCGG---ACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 80673 0.73 0.649799
Target:  5'- -cGCCGGAGccgggcgcgugcgacGUGUGCCcGUGCGCCGc -3'
miRNA:   3'- gaCGGUCUUu--------------UACGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12804 0.73 0.659288
Target:  5'- -cGCUAGGGAuggGCgGCCUGaGCGCCGc -3'
miRNA:   3'- gaCGGUCUUUua-CG-CGGACaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.