miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 104007 0.65 0.965821
Target:  5'- -gGCCAGuauggcgcGCGCgCUGUacugcGCGCCGc -3'
miRNA:   3'- gaCGGUCuuuua---CGCG-GACA-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 95768 0.66 0.947212
Target:  5'- -cGCCGGGAGccucGCGCgCU--GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUua--CGCG-GAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 72492 0.66 0.945409
Target:  5'- -cGCCAGGA---GCGCCgcgcgaagcggGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGaca--------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 126640 1.1 0.003864
Target:  5'- uCUGCCAGAAAAUGCGCCUGUACGCCGg -3'
miRNA:   3'- -GACGGUCUUUUACGCGGACAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 115154 0.66 0.959485
Target:  5'- -aGCCGGggGucggGCGCCUccUGCGCg- -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGAc-AUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 66722 0.66 0.959485
Target:  5'- -cGCCGGuuGAUGCGCUucaccauguaguUGUGCacggGCUGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGG------------ACAUG----CGGC- -5'
23564 5' -53.2 NC_005261.1 + 51976 0.66 0.955637
Target:  5'- gCUGCUGGAccgcgGCGCCgc--CGCCGa -3'
miRNA:   3'- -GACGGUCUuuua-CGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 44862 0.66 0.955637
Target:  5'- -cGCgAGGAAGaGCGCCgccgcGaGCGCCGc -3'
miRNA:   3'- gaCGgUCUUUUaCGCGGa----CaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127866 0.66 0.951547
Target:  5'- -cGCCAGGgcacgagcggGAGUcGCGCCg--GCGCCc -3'
miRNA:   3'- gaCGGUCU----------UUUA-CGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 47252 0.66 0.951547
Target:  5'- -aGCCgAGGAccUGCGCCggccCGCCGg -3'
miRNA:   3'- gaCGG-UCUUuuACGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 90732 0.66 0.951547
Target:  5'- -cGCUGGGcc--GCGCCUGagGCGCUGg -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACa-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 104403 0.66 0.951547
Target:  5'- -cGCCAuAAAGcGCGCCgaaacgGCGCCGc -3'
miRNA:   3'- gaCGGUcUUUUaCGCGGaca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 87428 0.66 0.963098
Target:  5'- -cGCCGGcGAagGCGCCgaagccgaaGCGCCGc -3'
miRNA:   3'- gaCGGUCuUUuaCGCGGaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 65162 0.66 0.951547
Target:  5'- -cGCgCAGAAGGUGCGCUcgc-UGCCGu -3'
miRNA:   3'- gaCG-GUCUUUUACGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31789 0.66 0.963098
Target:  5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 126503 0.66 0.955637
Target:  5'- gCUGCCGcAGGcgGUcuGCCUGgGCGCCc -3'
miRNA:   3'- -GACGGUcUUUuaCG--CGGACaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 22656 0.66 0.951547
Target:  5'- -cGCUGGcg---GCGCCUGggcgGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 124031 0.66 0.946765
Target:  5'- -aGCCGGGcgccucuGAGUGCGCUa--GCGCCa -3'
miRNA:   3'- gaCGGUCU-------UUUACGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 61105 0.66 0.959485
Target:  5'- -cGCCgAGAucgcgcgcUGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGG-UCUuuu-----ACGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 64041 0.66 0.959485
Target:  5'- -gGCgCGGcuc-UGCGCCgcgugGUGCGCCa -3'
miRNA:   3'- gaCG-GUCuuuuACGCGGa----CAUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.