miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 33596 0.67 0.937794
Target:  5'- --aCCAGggGcgGCGCCg--GCGCgGg -3'
miRNA:   3'- gacGGUCuuUuaCGCGGacaUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 72492 0.66 0.945409
Target:  5'- -cGCCAGGA---GCGCCgcgcgaagcggGCGCCGc -3'
miRNA:   3'- gaCGGUCUUuuaCGCGGaca--------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 104403 0.66 0.951547
Target:  5'- -cGCCAuAAAGcGCGCCgaaacgGCGCCGc -3'
miRNA:   3'- gaCGGUcUUUUaCGCGGaca---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 61105 0.66 0.959485
Target:  5'- -cGCCgAGAucgcgcgcUGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGG-UCUuuu-----ACGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108737 0.67 0.927365
Target:  5'- -gGCCAGcgGcgGCGCCgcgGCGuCCGc -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGC-GGC- -5'
23564 5' -53.2 NC_005261.1 + 70100 0.67 0.932707
Target:  5'- -cGCCGgcGAGAAgcucgGCGCCUcGUGC-CCGg -3'
miRNA:   3'- gaCGGU--CUUUUa----CGCGGA-CAUGcGGC- -5'
23564 5' -53.2 NC_005261.1 + 95768 0.66 0.947212
Target:  5'- -cGCCGGGAGccucGCGCgCU--GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUua--CGCG-GAcaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31789 0.66 0.963098
Target:  5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 77540 0.67 0.936797
Target:  5'- aUGCCGGGcugguAcgGCGCCgccgccagugGCGCCGc -3'
miRNA:   3'- gACGGUCUu----UuaCGCGGaca-------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 87428 0.66 0.963098
Target:  5'- -cGCCGGcGAagGCGCCgaagccgaaGCGCCGc -3'
miRNA:   3'- gaCGGUCuUUuaCGCGGaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 124031 0.66 0.946765
Target:  5'- -aGCCGGGcgccucuGAGUGCGCUa--GCGCCa -3'
miRNA:   3'- gaCGGUCU-------UUUACGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 5267 0.67 0.937794
Target:  5'- -cGCCGGGAGAcGCcauggccgGCCgcgGUGCGCgCGg -3'
miRNA:   3'- gaCGGUCUUUUaCG--------CGGa--CAUGCG-GC- -5'
23564 5' -53.2 NC_005261.1 + 65162 0.66 0.951547
Target:  5'- -cGCgCAGAAGGUGCGCUcgc-UGCCGu -3'
miRNA:   3'- gaCG-GUCUUUUACGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127866 0.66 0.951547
Target:  5'- -cGCCAGGgcacgagcggGAGUcGCGCCg--GCGCCc -3'
miRNA:   3'- gaCGGUCU----------UUUA-CGCGGacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 51976 0.66 0.955637
Target:  5'- gCUGCUGGAccgcgGCGCCgc--CGCCGa -3'
miRNA:   3'- -GACGGUCUuuua-CGCGGacauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 115154 0.66 0.959485
Target:  5'- -aGCCGGggGucggGCGCCUccUGCGCg- -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGAc-AUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 69520 0.67 0.921768
Target:  5'- gCUGCCGGAGcugGCGCgg--GCGCUGg -3'
miRNA:   3'- -GACGGUCUUuuaCGCGgacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 86488 0.67 0.927365
Target:  5'- -gGCCGGGccg-GCGCCUGUcuGCGgCa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGACA--UGCgGc -5'
23564 5' -53.2 NC_005261.1 + 1956 0.67 0.932707
Target:  5'- -cGCgCAGGuacacGUGCGCCUGcccgACgGCCGg -3'
miRNA:   3'- gaCG-GUCUuu---UACGCGGACa---UG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 120360 0.67 0.932707
Target:  5'- -cGCUGGAcgGUGCGCgacgGCGCCGc -3'
miRNA:   3'- gaCGGUCUuuUACGCGgacaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.