Results 1 - 20 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23564 | 5' | -53.2 | NC_005261.1 | + | 126640 | 1.1 | 0.003864 |
Target: 5'- uCUGCCAGAAAAUGCGCCUGUACGCCGg -3' miRNA: 3'- -GACGGUCUUUUACGCGGACAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 35763 | 0.78 | 0.382373 |
Target: 5'- -cGCCgAGGAGGUccgGCGCCUGcGCGCCGa -3' miRNA: 3'- gaCGG-UCUUUUA---CGCGGACaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 84226 | 0.78 | 0.417555 |
Target: 5'- -cGCUcGcgGcgGCGCCUGUGCGCCGc -3' miRNA: 3'- gaCGGuCuuUuaCGCGGACAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 39712 | 0.78 | 0.417555 |
Target: 5'- -gGCCGGAucucGCGCCUgcccGUACGCCGg -3' miRNA: 3'- gaCGGUCUuuuaCGCGGA----CAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 29965 | 0.77 | 0.426654 |
Target: 5'- -cGCUAGAGGcgGCGCg-GUGCGCCGc -3' miRNA: 3'- gaCGGUCUUUuaCGCGgaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 134483 | 0.77 | 0.426654 |
Target: 5'- -cGCUAGAGGcgGCGCg-GUGCGCCGc -3' miRNA: 3'- gaCGGUCUUUuaCGCGgaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 68866 | 0.77 | 0.464187 |
Target: 5'- uCUGCCGcGGcuGUGCGCCgucGUGCGCUGc -3' miRNA: 3'- -GACGGU-CUuuUACGCGGa--CAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 83730 | 0.76 | 0.513396 |
Target: 5'- -cGCCGGAGg--GCGCCUGcguuUGCGCCu -3' miRNA: 3'- gaCGGUCUUuuaCGCGGAC----AUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 13682 | 0.75 | 0.543928 |
Target: 5'- -cGCCuGGGAGAUG-GCCgGUACGCCGc -3' miRNA: 3'- gaCGG-UCUUUUACgCGGaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 131421 | 0.74 | 0.585491 |
Target: 5'- gCUGCCGGcAGcgGCGCCg--GCGCCc -3' miRNA: 3'- -GACGGUCuUUuaCGCGGacaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 90050 | 0.74 | 0.606517 |
Target: 5'- gCUGCCGGAcagccAGcgGCGCCccgcggGCGCCGa -3' miRNA: 3'- -GACGGUCU-----UUuaCGCGGaca---UGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 73531 | 0.74 | 0.617064 |
Target: 5'- -cGUgGGGAAcaucGUGCGCCaGUACGCCa -3' miRNA: 3'- gaCGgUCUUU----UACGCGGaCAUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 101602 | 0.74 | 0.627623 |
Target: 5'- -cGCCGGcuuc-GCGCCguuUGUGCGCCGg -3' miRNA: 3'- gaCGGUCuuuuaCGCGG---ACAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 80673 | 0.73 | 0.649799 |
Target: 5'- -cGCCGGAGccgggcgcgugcgacGUGUGCCcGUGCGCCGc -3' miRNA: 3'- gaCGGUCUUu--------------UACGCGGaCAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 12804 | 0.73 | 0.659288 |
Target: 5'- -cGCUAGGGAuggGCgGCCUGaGCGCCGc -3' miRNA: 3'- gaCGGUCUUUua-CG-CGGACaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 98367 | 0.73 | 0.680296 |
Target: 5'- cCUGCUGGcc-GUGUGCCUGgGCGCCc -3' miRNA: 3'- -GACGGUCuuuUACGCGGACaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 99560 | 0.72 | 0.690742 |
Target: 5'- -cGCCAGGAAGgcgucguagcucUGgGCCUGcGCGCCc -3' miRNA: 3'- gaCGGUCUUUU------------ACgCGGACaUGCGGc -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 72718 | 0.72 | 0.701136 |
Target: 5'- -cGCUGGGugaugGAGUGCGCCaUG-ACGCCGg -3' miRNA: 3'- gaCGGUCU-----UUUACGCGG-ACaUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 69476 | 0.72 | 0.731906 |
Target: 5'- -gGCCAcauccgcgcGAugcuGGUGCaCCUGUACGCCGg -3' miRNA: 3'- gaCGGU---------CUu---UUACGcGGACAUGCGGC- -5' |
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23564 | 5' | -53.2 | NC_005261.1 | + | 44957 | 0.72 | 0.731906 |
Target: 5'- cCUGCCGGuguuGGAggcGCGCgCUGgcGCGCCGg -3' miRNA: 3'- -GACGGUCu---UUUa--CGCG-GACa-UGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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