miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 104007 0.65 0.965821
Target:  5'- -gGCCAGuauggcgcGCGCgCUGUacugcGCGCCGc -3'
miRNA:   3'- gaCGGUCuuuua---CGCG-GACA-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 77075 0.66 0.947212
Target:  5'- -gGCCGucGAGGcgGCGCCgGUGCacgGCCa -3'
miRNA:   3'- gaCGGU--CUUUuaCGCGGaCAUG---CGGc -5'
23564 5' -53.2 NC_005261.1 + 61105 0.66 0.959485
Target:  5'- -cGCCgAGAucgcgcgcUGCGCC-GUGCGCUGc -3'
miRNA:   3'- gaCGG-UCUuuu-----ACGCGGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 19299 0.66 0.955637
Target:  5'- -gGCCAGccgcGcgGCGCCgcgcccgcgGCGCCGg -3'
miRNA:   3'- gaCGGUCuu--UuaCGCGGaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 136306 0.66 0.963098
Target:  5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 65288 0.66 0.959485
Target:  5'- -aGCCGGugccgGCGCCg--GCGCUGc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 127173 0.66 0.951547
Target:  5'- -cGCUGGcg---GCGCCUGggcgGCGCCc -3'
miRNA:   3'- gaCGGUCuuuuaCGCGGACa---UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 31789 0.66 0.963098
Target:  5'- gCUGCCcgcGGcgcAGUGCGCCgc-GCGCUGg -3'
miRNA:   3'- -GACGG---UCuu-UUACGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 87428 0.66 0.963098
Target:  5'- -cGCCGGcGAagGCGCCgaagccgaaGCGCCGc -3'
miRNA:   3'- gaCGGUCuUUuaCGCGGaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 115154 0.66 0.959485
Target:  5'- -aGCCGGggGucggGCGCCUccUGCGCg- -3'
miRNA:   3'- gaCGGUCuuUua--CGCGGAc-AUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 70394 0.66 0.951547
Target:  5'- -gGcCCGGAGAGUGCGgcccuCCUGcgcGCGCCc -3'
miRNA:   3'- gaC-GGUCUUUUACGC-----GGACa--UGCGGc -5'
23564 5' -53.2 NC_005261.1 + 15191 0.66 0.955637
Target:  5'- -gGgCAGAGAAgggGUGCCUGc-UGCCGa -3'
miRNA:   3'- gaCgGUCUUUUa--CGCGGACauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 66722 0.66 0.959485
Target:  5'- -cGCCGGuuGAUGCGCUucaccauguaguUGUGCacggGCUGg -3'
miRNA:   3'- gaCGGUCuuUUACGCGG------------ACAUG----CGGC- -5'
23564 5' -53.2 NC_005261.1 + 78244 0.66 0.955637
Target:  5'- gCUGCCcGAGGGUGCGgaCg--GCGCCu -3'
miRNA:   3'- -GACGGuCUUUUACGCg-GacaUGCGGc -5'
23564 5' -53.2 NC_005261.1 + 23907 0.66 0.963098
Target:  5'- -aGCCAGuccaccuUGCGCCgg-ACuGCCGg -3'
miRNA:   3'- gaCGGUCuuuu---ACGCGGacaUG-CGGC- -5'
23564 5' -53.2 NC_005261.1 + 68119 0.66 0.959485
Target:  5'- uUGCCGGGcacgagGCGCCgagcuucuCGCCGg -3'
miRNA:   3'- gACGGUCUuuua--CGCGGacau----GCGGC- -5'
23564 5' -53.2 NC_005261.1 + 47888 0.66 0.951547
Target:  5'- -aGCaCAGGuuGUGCGCCggaugAUGCUGg -3'
miRNA:   3'- gaCG-GUCUuuUACGCGGaca--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31294 0.66 0.959485
Target:  5'- -gGCCG--AGGUGCGCgUGU-CGCUGg -3'
miRNA:   3'- gaCGGUcuUUUACGCGgACAuGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 14132 0.66 0.959485
Target:  5'- gUGCCGGcccuGUGCGCgCgcuacgcggGCGCCGg -3'
miRNA:   3'- gACGGUCuuu-UACGCG-Gaca------UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 87149 0.66 0.959485
Target:  5'- -gGCgagCAGGAAcaGgGCCgUGUACGCCGa -3'
miRNA:   3'- gaCG---GUCUUUuaCgCGG-ACAUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.