miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23564 5' -53.2 NC_005261.1 + 132618 0.71 0.761848
Target:  5'- -cGCCAGggG--GCGCUg--GCGCCGa -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 83031 0.71 0.790687
Target:  5'- -cGCCGGAucc-GCGCUacgccGUGCGCCGa -3'
miRNA:   3'- gaCGGUCUuuuaCGCGGa----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 3621 0.71 0.790687
Target:  5'- gCUGCCcGGAGcacGCGCUccggGUGCGCCGc -3'
miRNA:   3'- -GACGGuCUUUua-CGCGGa---CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 31423 0.71 0.781213
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 11099 0.71 0.761848
Target:  5'- -gGCgGGAcgcgacgggacgAGAUGCGCCggcagcGUGCGCCGc -3'
miRNA:   3'- gaCGgUCU------------UUUACGCGGa-----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 70465 0.71 0.741992
Target:  5'- -gGCCGGggGcgGCGCCUcggACGgCGa -3'
miRNA:   3'- gaCGGUCuuUuaCGCGGAca-UGCgGC- -5'
23564 5' -53.2 NC_005261.1 + 78809 0.71 0.761848
Target:  5'- cCUGCCGGGccgcgcGAcaGCGCCg--GCGCCGg -3'
miRNA:   3'- -GACGGUCU------UUuaCGCGGacaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 115617 0.71 0.761848
Target:  5'- -gGCgGGAcgcgacgggacgAGAUGCGCCggcagcGUGCGCCGc -3'
miRNA:   3'- gaCGgUCU------------UUUACGCGGa-----CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 135940 0.71 0.781213
Target:  5'- gCUGCCcGggGAgGCGCUggcgGCGCCGc -3'
miRNA:   3'- -GACGGuCuuUUaCGCGGaca-UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 60664 0.71 0.781213
Target:  5'- gUGCCAGGgcgcGGcgGCGCCacUGgcggcgGCGCCGu -3'
miRNA:   3'- gACGGUCU----UUuaCGCGG--ACa-----UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 67087 0.71 0.781213
Target:  5'- cCUGCCGGGGcg-GCGCUUGagaGCGUCGu -3'
miRNA:   3'- -GACGGUCUUuuaCGCGGACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 108138 0.71 0.790687
Target:  5'- gCUGCCcGGAGcacGCGCUccggGUGCGCCGc -3'
miRNA:   3'- -GACGGuCUUUua-CGCGGa---CAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 12891 0.71 0.790687
Target:  5'- cCUGCUGGAcgcccUGCGCgCUGcggACGCCGa -3'
miRNA:   3'- -GACGGUCUuuu--ACGCG-GACa--UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 37373 0.71 0.790687
Target:  5'- -cGCCcGAGGcgGCGCUgugGUACGCgGa -3'
miRNA:   3'- gaCGGuCUUUuaCGCGGa--CAUGCGgC- -5'
23564 5' -53.2 NC_005261.1 + 101564 0.71 0.790687
Target:  5'- -cGCC-GAGGAUGCGCUcGgcgcGCGCCGu -3'
miRNA:   3'- gaCGGuCUUUUACGCGGaCa---UGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 89949 0.7 0.826968
Target:  5'- -cGCUGGAAGcgGCGCUUGcGCGCg- -3'
miRNA:   3'- gaCGGUCUUUuaCGCGGACaUGCGgc -5'
23564 5' -53.2 NC_005261.1 + 66782 0.7 0.826968
Target:  5'- aUGCUccgGGAGGcgGCGgCUGcGCGCCGc -3'
miRNA:   3'- gACGG---UCUUUuaCGCgGACaUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 113609 0.7 0.82522
Target:  5'- uCUGCCAGuguccucacguGGUGUGCCgagagGgcCGCCGg -3'
miRNA:   3'- -GACGGUCuu---------UUACGCGGa----CauGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 62860 0.7 0.809169
Target:  5'- -cGCCAGg----GCGuCCaGUACGCCGg -3'
miRNA:   3'- gaCGGUCuuuuaCGC-GGaCAUGCGGC- -5'
23564 5' -53.2 NC_005261.1 + 35105 0.7 0.809169
Target:  5'- -cGCUGGAGAAcccggGCGCgCUG-GCGCCGg -3'
miRNA:   3'- gaCGGUCUUUUa----CGCG-GACaUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.