miRNA display CGI


Results 61 - 80 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 82671 0.66 0.883065
Target:  5'- gAGCGccuCGAGC-CGCUCgucggGCGCCa- -3'
miRNA:   3'- -UCGCuuuGCUUGuGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 69340 0.66 0.88932
Target:  5'- cAGCGAcggagacGGCGAcgACGCGgCCgcgcGCGCgCUGg -3'
miRNA:   3'- -UCGCU-------UUGCU--UGUGCgGGa---CGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 100021 0.66 0.890003
Target:  5'- gAGCGAggUGuugagcagcAGCACGCCgCggcGCGCCc- -3'
miRNA:   3'- -UCGCUuuGC---------UUGUGCGG-Ga--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100876 0.66 0.883065
Target:  5'- gGGCG--GCGAGCAcCGCCC-GCggauaaagauGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUGU-GCGGGaCG----------CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 64026 0.66 0.890003
Target:  5'- gAGCGuguucuCGucgGCGCgGCUCUGCGCCg- -3'
miRNA:   3'- -UCGCuuu---GCu--UGUG-CGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 51371 0.66 0.890003
Target:  5'- cGCGGAguACGcGCAgGCCgUGCGCg-- -3'
miRNA:   3'- uCGCUU--UGCuUGUgCGGgACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 124917 0.66 0.890003
Target:  5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3'
miRNA:   3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 66240 0.66 0.892714
Target:  5'- aGGCcaGggGCGAcgcugcgcaccugccGCGCGCUCcGCGCCc- -3'
miRNA:   3'- -UCG--CuuUGCU---------------UGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36593 0.66 0.883065
Target:  5'- cGGCcaccgGggGgGGGCAgCGCuCCUGCGCCc- -3'
miRNA:   3'- -UCG-----CuuUgCUUGU-GCG-GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 79032 0.66 0.883065
Target:  5'- -cCGggGCGccCGCGCCCUugGCGUCg- -3'
miRNA:   3'- ucGCuuUGCuuGUGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133658 0.66 0.890003
Target:  5'- gAGCGcuGCGuGCuCGCCUccgGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 14956 0.66 0.880939
Target:  5'- aAGCGAGcgggcgugccugggGCGAcuGCGCGgCC-GCGCCg- -3'
miRNA:   3'- -UCGCUU--------------UGCU--UGUGCgGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 65825 0.66 0.890003
Target:  5'- cGGCGgcGCGAAgcUGCCCgaGUGCCg- -3'
miRNA:   3'- -UCGCuuUGCUUguGCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 69384 0.66 0.8759
Target:  5'- -uCGAGAUGAccGC-CGUCCUGaGCCUGg -3'
miRNA:   3'- ucGCUUUGCU--UGuGCGGGACgCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 114328 0.66 0.8759
Target:  5'- cGGCGcaAggUGGACugGCUCgagcgGCGCgUGg -3'
miRNA:   3'- -UCGC--UuuGCUUGugCGGGa----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 47788 0.66 0.8759
Target:  5'- aAGCGGAAgGGcccgauccGCGCGCgCaGCGCCa- -3'
miRNA:   3'- -UCGCUUUgCU--------UGUGCGgGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 55245 0.66 0.883769
Target:  5'- cGCGAGGCGGccgccuccgugcucgACGCgcaccacgucuuccGCCCgGCGCCg- -3'
miRNA:   3'- uCGCUUUGCU---------------UGUG--------------CGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 60347 0.66 0.890003
Target:  5'- cGGCGccGCGGccGCGCGCCaggcaGUGCUUGg -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCGGga---CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 1828 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 62559 0.66 0.860909
Target:  5'- cGGCGAGgaagagguucuGCGcGCGCGCCaggaacGCGCCg- -3'
miRNA:   3'- -UCGCUU-----------UGCuUGUGCGGga----CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.