miRNA display CGI


Results 41 - 60 of 528 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 133815 0.66 0.883065
Target:  5'- cGGCGAGGC---CugGCCCggcagcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuuGugCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133734 0.66 0.890003
Target:  5'- gGGCGgcGCGGACaACGCCacgcGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCUUG-UGCGGga--CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 104367 0.66 0.883065
Target:  5'- aGGCGGgcGGCGGggggcccucccgGCcCGCCCaGCGCCa- -3'
miRNA:   3'- -UCGCU--UUGCU------------UGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 90228 0.66 0.883065
Target:  5'- cGGCGggGCGAcggcggcuGCgACGCCgUGUucGcCCUGg -3'
miRNA:   3'- -UCGCuuUGCU--------UG-UGCGGgACG--C-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 44300 0.66 0.8759
Target:  5'- cGGCGcccGCGGACGgcgcaaGCCCgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu-UGCUUGUg-----CGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 109008 0.66 0.883065
Target:  5'- cGGCGuagccugcGCGGgccccagucGCGCGCCCgcgcggGCGCCg- -3'
miRNA:   3'- -UCGCuu------UGCU---------UGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100021 0.66 0.890003
Target:  5'- gAGCGAggUGuugagcagcAGCACGCCgCggcGCGCCc- -3'
miRNA:   3'- -UCGCUuuGC---------UUGUGCGG-Ga--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 43647 0.66 0.883065
Target:  5'- gGGCGGA--GGGCGCGUUCgGCGCCc- -3'
miRNA:   3'- -UCGCUUugCUUGUGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 79520 0.66 0.882359
Target:  5'- cGGCGGuggcgcaccucucAGCG-GCGCGCCCUGacgGCCc- -3'
miRNA:   3'- -UCGCU-------------UUGCuUGUGCGGGACg--CGGac -5'
23565 3' -56.1 NC_005261.1 + 104749 0.66 0.860909
Target:  5'- cGCGGGccccGCGAGCGgGCCCggcugcggcgGCGgCUGc -3'
miRNA:   3'- uCGCUU----UGCUUGUgCGGGa---------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 67642 0.66 0.860909
Target:  5'- gGGCG-GGC--GCACGCCgCUGCGCUc- -3'
miRNA:   3'- -UCGCuUUGcuUGUGCGG-GACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 36385 0.66 0.860909
Target:  5'- aGGCGGccGGCGGGCGCGCggcggagaucagCC-GCGCgCUGg -3'
miRNA:   3'- -UCGCU--UUGCUUGUGCG------------GGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 122695 0.66 0.860909
Target:  5'- cGCGucGCGAACgACGCCUUccGCuccuGCCUGc -3'
miRNA:   3'- uCGCuuUGCUUG-UGCGGGA--CG----CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 22034 0.66 0.868513
Target:  5'- gAGCGcuucuGCGGcgACGCGCCCagcgGCGUCg- -3'
miRNA:   3'- -UCGCuu---UGCU--UGUGCGGGa---CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 100876 0.66 0.883065
Target:  5'- gGGCG--GCGAGCAcCGCCC-GCggauaaagauGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUGU-GCGGGaCG----------CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 67692 0.66 0.8759
Target:  5'- cGGCGGGugGGGCGCGg---GCGCCg- -3'
miRNA:   3'- -UCGCUUugCUUGUGCgggaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 81583 0.66 0.860909
Target:  5'- uGGaaGAGCuccAGCGCGCCCcGCGUCUGg -3'
miRNA:   3'- -UCgcUUUGc--UUGUGCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 76992 0.66 0.890003
Target:  5'- cAGCGAGuCGAGCucgcgccgaACGCCgaGCGCg-- -3'
miRNA:   3'- -UCGCUUuGCUUG---------UGCGGgaCGCGgac -5'
23565 3' -56.1 NC_005261.1 + 124917 0.66 0.890003
Target:  5'- cGCGGGaagccGCGGaggcuccgccGCGCGCgCUGUGCCg- -3'
miRNA:   3'- uCGCUU-----UGCU----------UGUGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 106345 0.66 0.8759
Target:  5'- cGCGuAAGCGGccucgGCGCGCgCgaagGCGCCg- -3'
miRNA:   3'- uCGC-UUUGCU-----UGUGCGgGa---CGCGGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.