miRNA display CGI


Results 41 - 60 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 111844 0.75 0.400689
Target:  5'- cGCGGAGCGcguGCGCGCCaaccGCGCCUu -3'
miRNA:   3'- uCGCUUUGCu--UGUGCGGga--CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 33680 0.75 0.400689
Target:  5'- gGGCGAccuGGCGGACGC-CaagCUGCGCCUGg -3'
miRNA:   3'- -UCGCU---UUGCUUGUGcGg--GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 62906 0.75 0.400689
Target:  5'- gGGCGggGCGGacGCGCGCCCUaGC-CCa- -3'
miRNA:   3'- -UCGCuuUGCU--UGUGCGGGA-CGcGGac -5'
23565 3' -56.1 NC_005261.1 + 76168 0.75 0.40937
Target:  5'- cGCGAGGCgGGGCA-GCUgCUGCGCCUGg -3'
miRNA:   3'- uCGCUUUG-CUUGUgCGG-GACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 129807 0.75 0.40937
Target:  5'- cGCGcucGCGccCGCGCCCUGCGCCc- -3'
miRNA:   3'- uCGCuu-UGCuuGUGCGGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 130575 0.75 0.418168
Target:  5'- gGGCgGAAGCGccgccGCGCgGCCCcGCGCCUGg -3'
miRNA:   3'- -UCG-CUUUGCu----UGUG-CGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 101690 0.75 0.418168
Target:  5'- cGGCGAAGCGGGCguggucgaaGCGCUccagCUGCGCCa- -3'
miRNA:   3'- -UCGCUUUGCUUG---------UGCGG----GACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 31198 0.75 0.418168
Target:  5'- cGCGgcGCGuGGCGCGCCCUGCuCCUu -3'
miRNA:   3'- uCGCuuUGC-UUGUGCGGGACGcGGAc -5'
23565 3' -56.1 NC_005261.1 + 5869 0.74 0.427079
Target:  5'- gAGCGcgGCGAGCGCGCCgcggcggaagCUGCGCaUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG----------GACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 102764 0.74 0.436102
Target:  5'- cGCGGAcGCGAGCGCGCCCgagGCCUc -3'
miRNA:   3'- uCGCUU-UGCUUGUGCGGGacgCGGAc -5'
23565 3' -56.1 NC_005261.1 + 33208 0.74 0.445234
Target:  5'- gAGCGGGAgaGGACAcCGCCCUgGCGCCc- -3'
miRNA:   3'- -UCGCUUUg-CUUGU-GCGGGA-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 17567 0.74 0.445234
Target:  5'- cGCGAGAUcacaGGCGCGCCC-GCGCCUu -3'
miRNA:   3'- uCGCUUUGc---UUGUGCGGGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 29926 0.74 0.445234
Target:  5'- cGCGAGcugGCGGACGCuGCgCUGCgGCCUGc -3'
miRNA:   3'- uCGCUU---UGCUUGUG-CGgGACG-CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 75925 0.74 0.445234
Target:  5'- cGCGggGCcgccGCGCGCCCgcgcgGCGCCg- -3'
miRNA:   3'- uCGCuuUGcu--UGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 49073 0.74 0.454472
Target:  5'- cGCGAAGCGGGCACGCgCCgcGgGCCc- -3'
miRNA:   3'- uCGCUUUGCUUGUGCG-GGa-CgCGGac -5'
23565 3' -56.1 NC_005261.1 + 49640 0.73 0.473253
Target:  5'- gAGCG-AGCGGAUGCGCCCgaGCGaCUGg -3'
miRNA:   3'- -UCGCuUUGCUUGUGCGGGa-CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 18497 0.73 0.477056
Target:  5'- gGGCGggGCGcgcgggaagggguugGGCACGCCCUccucaucgccGCGCgUGg -3'
miRNA:   3'- -UCGCuuUGC---------------UUGUGCGGGA----------CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 47431 0.73 0.482789
Target:  5'- cGGUG-GGCGAACACGUCCgacagGCGCCc- -3'
miRNA:   3'- -UCGCuUUGCUUGUGCGGGa----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 81712 0.73 0.482789
Target:  5'- cGCGcGACGAACGCgGCCaCUugcgcaaacGCGCCUGa -3'
miRNA:   3'- uCGCuUUGCUUGUG-CGG-GA---------CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 94818 0.73 0.482789
Target:  5'- cGGCG--GCGGAgGcCGCCCccgGCGCCUGg -3'
miRNA:   3'- -UCGCuuUGCUUgU-GCGGGa--CGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.