miRNA display CGI


Results 41 - 60 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 13414 0.69 0.74563
Target:  5'- gGGCGAcGCGAAgGCGCaCCgcGCGUCg- -3'
miRNA:   3'- -UCGCUuUGCUUgUGCG-GGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 13628 0.68 0.799467
Target:  5'- gAGCGguACGGcugcacgcggaagcGCGCGCCgUGcCGCCg- -3'
miRNA:   3'- -UCGCuuUGCU--------------UGUGCGGgAC-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 13903 0.67 0.83686
Target:  5'- aGGCGcugcucuuuuuGGCGGACGCGCUgCUGCGCgUa -3'
miRNA:   3'- -UCGCu----------UUGCUUGUGCGG-GACGCGgAc -5'
23565 3' -56.1 NC_005261.1 + 13970 0.72 0.582398
Target:  5'- gGGCGc-GCGGGCgGCGCCgCgcgGCGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUG-UGCGG-Ga--CGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 14278 0.67 0.853095
Target:  5'- cGCGGAGCGGGCGCuGCgCUG-GCUg- -3'
miRNA:   3'- uCGCUUUGCUUGUG-CGgGACgCGGac -5'
23565 3' -56.1 NC_005261.1 + 14956 0.66 0.880939
Target:  5'- aAGCGAGcgggcgugccugggGCGAcuGCGCGgCC-GCGCCg- -3'
miRNA:   3'- -UCGCUU--------------UGCU--UGUGCgGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 14982 0.69 0.725869
Target:  5'- gGGCGA--UGGGCgGgGCCC-GCGCCUGg -3'
miRNA:   3'- -UCGCUuuGCUUG-UgCGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 15662 0.67 0.828454
Target:  5'- cGGCGGAGCuGcGCAgCGCCUUGCGUg-- -3'
miRNA:   3'- -UCGCUUUG-CuUGU-GCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 15769 0.66 0.866254
Target:  5'- cGCGAuacacaaggccgcuGGCGGGCGcCGCCCgcgcggccaGCGCCg- -3'
miRNA:   3'- uCGCU--------------UUGCUUGU-GCGGGa--------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 15897 0.68 0.782927
Target:  5'- aGGCGAGcucuGCGAGCGCcaccugaccgccgGCCCgggcGuCGCCUGc -3'
miRNA:   3'- -UCGCUU----UGCUUGUG-------------CGGGa---C-GCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 16376 0.66 0.890003
Target:  5'- cGGCGGGagccGCGGGCugcugGCGCCggUGCGCCg- -3'
miRNA:   3'- -UCGCUU----UGCUUG-----UGCGGg-ACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 16476 0.66 0.860909
Target:  5'- cGGCGGGACGA---CGCCCUcgugGCGCaUGa -3'
miRNA:   3'- -UCGCUUUGCUuguGCGGGA----CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 17195 0.66 0.865497
Target:  5'- cGCGGcGGCGAgcaGCGCGCCCagcacggacagcaGCGCCa- -3'
miRNA:   3'- uCGCU-UUGCU---UGUGCGGGa------------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 17281 0.68 0.774487
Target:  5'- cGCGGGgcGCGAGCcuccaccuucccGCGCCCgGCGCUc- -3'
miRNA:   3'- uCGCUU--UGCUUG------------UGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 17567 0.74 0.445234
Target:  5'- cGCGAGAUcacaGGCGCGCCC-GCGCCUu -3'
miRNA:   3'- uCGCUUUGc---UUGUGCGGGaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 17998 0.68 0.755363
Target:  5'- cGGCGAAGCGGcgcucCACGUCg-GCGCuCUGg -3'
miRNA:   3'- -UCGCUUUGCUu----GUGCGGgaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 18289 0.66 0.890003
Target:  5'- cGCGGuacgucguGACGGuCACGaCCUUGCGCUg- -3'
miRNA:   3'- uCGCU--------UUGCUuGUGC-GGGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 18497 0.73 0.477056
Target:  5'- gGGCGggGCGcgcgggaagggguugGGCACGCCCUccucaucgccGCGCgUGg -3'
miRNA:   3'- -UCGCuuUGC---------------UUGUGCGGGA----------CGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 19264 0.67 0.853095
Target:  5'- cAGCGcgcGCGggUACGCCa-GCGUCUc -3'
miRNA:   3'- -UCGCuu-UGCuuGUGCGGgaCGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 19306 0.71 0.613272
Target:  5'- cGCGcgGCGc-CGCGCCCgcgGCGCCg- -3'
miRNA:   3'- uCGCuuUGCuuGUGCGGGa--CGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.