miRNA display CGI


Results 21 - 40 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 5107 0.66 0.883065
Target:  5'- cAGgGAGACGcGCACGCCgUGgaagGCCg- -3'
miRNA:   3'- -UCgCUUUGCuUGUGCGGgACg---CGGac -5'
23565 3' -56.1 NC_005261.1 + 5548 0.69 0.735795
Target:  5'- cAGCGAGACgGGGgGCGCCCgaGCGgCg- -3'
miRNA:   3'- -UCGCUUUG-CUUgUGCGGGa-CGCgGac -5'
23565 3' -56.1 NC_005261.1 + 5869 0.74 0.427079
Target:  5'- gAGCGcgGCGAGCGCGCCgcggcggaagCUGCGCaUGg -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG----------GACGCGgAC- -5'
23565 3' -56.1 NC_005261.1 + 6447 0.71 0.613272
Target:  5'- gGGCGcgGCGucggggcccagcGGCGCGCCCgccGCGCCg- -3'
miRNA:   3'- -UCGCuuUGC------------UUGUGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 7594 0.73 0.492416
Target:  5'- cGGCG-AGCGcacGCGCGCCCcGCGCgCUGu -3'
miRNA:   3'- -UCGCuUUGCu--UGUGCGGGaCGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 7703 0.77 0.306099
Target:  5'- cGCGAcgAGCGGGCGCGCuucggccagcgCCUGCGCCa- -3'
miRNA:   3'- uCGCU--UUGCUUGUGCG-----------GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 7972 0.67 0.811988
Target:  5'- cGCGGGACGcccccaguacgagccGCugGCgCgGCGCCUGa -3'
miRNA:   3'- uCGCUUUGCu--------------UGugCGgGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 9512 0.67 0.83686
Target:  5'- cGGCGG-GCGGGCgGgGCCCgggcGCGCCUc -3'
miRNA:   3'- -UCGCUuUGCUUG-UgCGGGa---CGCGGAc -5'
23565 3' -56.1 NC_005261.1 + 10355 0.68 0.782927
Target:  5'- cGGCGuuugucACGGccgacacGCGCGCgCUGCGCCg- -3'
miRNA:   3'- -UCGCuu----UGCU-------UGUGCGgGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 10417 0.69 0.74563
Target:  5'- cGCGAGcGCGAGCG-GCCCgccgccgcgGCGCCg- -3'
miRNA:   3'- uCGCUU-UGCUUGUgCGGGa--------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 10641 0.7 0.654601
Target:  5'- cGCGGcccCGAAgACGCCCaggGCGcCCUGg -3'
miRNA:   3'- uCGCUuu-GCUUgUGCGGGa--CGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 11045 0.71 0.613272
Target:  5'- cGGCGGcacuCGGGCGcCGCCCagGCGCCg- -3'
miRNA:   3'- -UCGCUuu--GCUUGU-GCGGGa-CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 11708 0.68 0.793091
Target:  5'- aGGCGcgGCGGGCgcggGCGCCCagGCagaccGCCUGc -3'
miRNA:   3'- -UCGCuuUGCUUG----UGCGGGa-CG-----CGGAC- -5'
23565 3' -56.1 NC_005261.1 + 11772 0.77 0.320604
Target:  5'- cGCGAGGCGAGCGCGCUg-GCGCggCUGg -3'
miRNA:   3'- uCGCUUUGCUUGUGCGGgaCGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 11878 0.77 0.313288
Target:  5'- uGCGggGCGAGCcCGCCCgcacgcGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGuGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 12145 0.72 0.555898
Target:  5'- cGCGaAGAUGGGCGCGCCCgccgaggccggcggGCGgCUGg -3'
miRNA:   3'- uCGC-UUUGCUUGUGCGGGa-------------CGCgGAC- -5'
23565 3' -56.1 NC_005261.1 + 12814 0.7 0.654601
Target:  5'- gGGCGGccUGAGCGcCGCCC-GCGCCg- -3'
miRNA:   3'- -UCGCUuuGCUUGU-GCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 12883 0.77 0.292102
Target:  5'- cGGCGGAGCcuGCuggACGCCCUGCGCgCUGc -3'
miRNA:   3'- -UCGCUUUGcuUG---UGCGGGACGCG-GAC- -5'
23565 3' -56.1 NC_005261.1 + 12927 0.68 0.783859
Target:  5'- cGCGGAgcgcccGCGggUccgGCGCCC-GCGgCCUGa -3'
miRNA:   3'- uCGCUU------UGCuuG---UGCGGGaCGC-GGAC- -5'
23565 3' -56.1 NC_005261.1 + 13048 0.66 0.890003
Target:  5'- cGCGggGcCGcGCGCGCCCcugccggGCGCg-- -3'
miRNA:   3'- uCGCuuU-GCuUGUGCGGGa------CGCGgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.