miRNA display CGI


Results 21 - 40 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23565 3' -56.1 NC_005261.1 + 133815 0.66 0.883065
Target:  5'- cGGCGAGGC---CugGCCCggcagcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGcuuGugCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133734 0.66 0.890003
Target:  5'- gGGCGgcGCGGACaACGCCacgcGCGCg-- -3'
miRNA:   3'- -UCGCuuUGCUUG-UGCGGga--CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 133658 0.66 0.890003
Target:  5'- gAGCGcuGCGuGCuCGCCUccgGCGCCa- -3'
miRNA:   3'- -UCGCuuUGCuUGuGCGGGa--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133396 0.72 0.531754
Target:  5'- uGCGgcGCGGACGcCGCcgCCUGCGCCc- -3'
miRNA:   3'- uCGCuuUGCUUGU-GCG--GGACGCGGac -5'
23565 3' -56.1 NC_005261.1 + 133103 0.72 0.561985
Target:  5'- cGCGAGcgccgGCGGGC-CGCCC-GCGCCg- -3'
miRNA:   3'- uCGCUU-----UGCUUGuGCGGGaCGCGGac -5'
23565 3' -56.1 NC_005261.1 + 132846 0.68 0.764985
Target:  5'- cGCGGc-CGucuACACGCacgggcacagCCUGCGCCUGc -3'
miRNA:   3'- uCGCUuuGCu--UGUGCG----------GGACGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 132648 0.67 0.845076
Target:  5'- -uCGAGGCGG--GCGCCCUcgGCGCCc- -3'
miRNA:   3'- ucGCUUUGCUugUGCGGGA--CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 132575 0.68 0.802176
Target:  5'- uGCGaAGACGucgGCGCGCCCgcgGaCGCCc- -3'
miRNA:   3'- uCGC-UUUGCu--UGUGCGGGa--C-GCGGac -5'
23565 3' -56.1 NC_005261.1 + 132525 0.76 0.367164
Target:  5'- gGGaCGAGuACGAGCGCGCCCUcGCGCg-- -3'
miRNA:   3'- -UC-GCUU-UGCUUGUGCGGGA-CGCGgac -5'
23565 3' -56.1 NC_005261.1 + 132125 0.68 0.773542
Target:  5'- gAGCGGGACGcgcggcuGAC-CGCCCUccuccucgagcGCGCCg- -3'
miRNA:   3'- -UCGCUUUGC-------UUGuGCGGGA-----------CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 131986 0.75 0.383684
Target:  5'- cGCGggGCGGGCAgGCCCUccccggGCGCacCUGg -3'
miRNA:   3'- uCGCuuUGCUUGUgCGGGA------CGCG--GAC- -5'
23565 3' -56.1 NC_005261.1 + 131767 0.77 0.299037
Target:  5'- cGGCGcgGCGGGCGCGCCgCUGgGCCc- -3'
miRNA:   3'- -UCGCuuUGCUUGUGCGG-GACgCGGac -5'
23565 3' -56.1 NC_005261.1 + 131673 0.7 0.675188
Target:  5'- uGCGAGgguGCG-AC-CGCCCUGCGCg-- -3'
miRNA:   3'- uCGCUU---UGCuUGuGCGGGACGCGgac -5'
23565 3' -56.1 NC_005261.1 + 131462 0.67 0.825897
Target:  5'- cGCGGGcgccucccgccuccGCGAGCGCGCCgUcGaCGCCUu -3'
miRNA:   3'- uCGCUU--------------UGCUUGUGCGGgA-C-GCGGAc -5'
23565 3' -56.1 NC_005261.1 + 131152 0.7 0.675188
Target:  5'- uGCGGuuaGAACAgGUCCUGCcCCUGg -3'
miRNA:   3'- uCGCUuugCUUGUgCGGGACGcGGAC- -5'
23565 3' -56.1 NC_005261.1 + 130840 0.67 0.83686
Target:  5'- uGCGcucaaccuuGCGcGCGCGCCCggccggGCGCCg- -3'
miRNA:   3'- uCGCuu-------UGCuUGUGCGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 130575 0.75 0.418168
Target:  5'- gGGCgGAAGCGccgccGCGCgGCCCcGCGCCUGg -3'
miRNA:   3'- -UCG-CUUUGCu----UGUG-CGGGaCGCGGAC- -5'
23565 3' -56.1 NC_005261.1 + 130267 0.71 0.633939
Target:  5'- uGCGggGCGucccGCGCGCCCc-CGCCa- -3'
miRNA:   3'- uCGCuuUGCu---UGUGCGGGacGCGGac -5'
23565 3' -56.1 NC_005261.1 + 130219 0.66 0.8759
Target:  5'- aGGCGGAA-GAGCGuCgGCCCgcucagGCGCCg- -3'
miRNA:   3'- -UCGCUUUgCUUGU-G-CGGGa-----CGCGGac -5'
23565 3' -56.1 NC_005261.1 + 130110 0.67 0.83686
Target:  5'- cAGCGAcugcgccuuGGCGAGC-CGCCgC-GCGCCg- -3'
miRNA:   3'- -UCGCU---------UUGCUUGuGCGG-GaCGCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.